ggKbase home page

scnpilot_solids1_trim150_scaffold_2287_7

Organism: SCNPILOT_SOLID_1_TRIM150_UNK

megabin RP 53 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 19 / 38 MC: 16
Location: 8121..8522

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T2B0_CAUSK similarity UNIREF
DB: UNIREF100
  • Identity: 45.7
  • Coverage: 129.0
  • Bit_score: 117
  • Evalue 9.50e-24
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:KGB52711.1}; TaxID=1502850 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. LC81.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 64.7
  • Coverage: 133.0
  • Bit_score: 171
  • Evalue 1.00e-39
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 45.7
  • Coverage: 129.0
  • Bit_score: 117
  • Evalue 3.00e-24

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sphingopyxis sp. LC81 → Sphingopyxis → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 402
ATGACGCAGGAAGTGTTCATCCGCCTGGCCCAGACGCAGACAGACCATTTCGATTCCACCGAGGCGTTCATCTTTCGCATCGCGACGAACCTGCTGCGCGACCGCTCGCGCCGCGACCGCGTGCGCAATGCCTACCGCCAGTCCGTCGAGCAGGATGATGCGGGCGAGGTCGATCCCCTCGACCCGCACCGCATCGCCGCCGCGCGCGAAACCATCGGCAAGCTGTGGGCGGCGATCCAGGCGCTGCCCGAGCCGACCCAGCAGATTTTCATCCTCTACCGCGTCGAGAATATGGACAAGCAGACGATTGCCGACAATTTCGCCTATAATGTGCGGACAGTCGAAAAGCATATTTCTCGCGCGCTGGTCTTTCTCGCTCGCCGGGTAGGGGGAAGGCCATGA
PROTEIN sequence
Length: 134
MTQEVFIRLAQTQTDHFDSTEAFIFRIATNLLRDRSRRDRVRNAYRQSVEQDDAGEVDPLDPHRIAAARETIGKLWAAIQALPEPTQQIFILYRVENMDKQTIADNFAYNVRTVEKHISRALVFLARRVGGRP*