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scnpilot_solids1_trim150_scaffold_6

Search features with annotation key words

Displaying items 1-30 of 301 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_6_1
Burkholderia sp. MSHR3999, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1230)
DNA (1230bp) protein (410aa)
Serine carboxypeptidase family protein n=28 Tax=pseudomallei group RepID=A2S1L2_BURM9
KY49.ctg7180000000025_quiver, whole genome shotgun sequence {ECO:0000313|EMBL:KIP13266.1}; TaxID=1542965 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSHR3999.;"
serine carboxypeptidase family protein
scnpilot_solids1_trim150_scaffold_6_2
Bacillus clausii, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(1881..2990)
DNA (1110bp) protein (370aa)
epoxide hydrolase (EC:3.3.2.9); K01253 microsomal epoxide hydrolase [EC:3.3.2.9]
Epoxide hydrolase 1 {ECO:0000313|EMBL:BAD63925.1}; EC=3.3.2.9 {ECO:0000313|EMBL:BAD63925.1};; TaxID=66692 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus clausii (strain KSM-K16).;"
multidrug MFS transporter n=1 Tax=Paenibacillus sp. JC66 RepID=UPI0002897A7E
scnpilot_solids1_trim150_scaffold_6_3
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3133..3753)
DNA (621bp) protein (207aa)
NADP oxidoreductase n=1 Tax=Cupriavidus sp. WS RepID=UPI00036F6068 rbh
NADP oxidoreductase coenzyme F420-dependent {ECO:0000313|EMBL:EDT09458.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
NADP oxidoreductase coenzyme F420-dependent; K06988 rbh
scnpilot_solids1_trim150_scaffold_6_4
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3828..4781)
DNA (954bp) protein (318aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Burkholderia sp. Ch1-1 RepID=I2ILA6_9BURK rbh
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:EIF31508.1}; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
putative epimerase/dehydratase rbh
scnpilot_solids1_trim150_scaffold_6_5
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4833..5885)
DNA (1053bp) protein (351aa)
NADP oxidoreductase n=1 Tax=Pseudomonas RepID=UPI00036C46BC rbh
coenzyme F420-dependent NADP oxidoreductase; K06988 rbh
NADP oxidoreductase coenzyme F420-dependent {ECO:0000313|EMBL:CDN50615.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
scnpilot_solids1_trim150_scaffold_6_6
Mesorhizobium sp. L103C105A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5953..6555)
DNA (603bp) protein (201aa)
UPI0003CFDD55 related cluster n=1 Tax=unknown RepID=UPI0003CFDD55 rbh
coenzyme F420-dependent NADP oxidoreductase; K06988 rbh
Myo-inositol 2-dehydrogenase {ECO:0000313|EMBL:ESZ74007.1}; TaxID=1287074 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C105A0.;"
scnpilot_solids1_trim150_scaffold_6_7
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6627..7361)
DNA (735bp) protein (245aa)
oxidoreductase n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003612012 rbh
Oxidoreductase {ECO:0000313|EMBL:ESY75711.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
short-chain dehydrogenase/reductase SDR rbh
scnpilot_solids1_trim150_scaffold_6_8
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7571..8464
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GTU9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:ERF81002.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
LysR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_6_9
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8692..9504
DNA (813bp) protein (271aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TKL8_9BRAD rbh
Oxidoreductase {ECO:0000313|EMBL:KJS14416.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
short-chain dehydrogenase/reductase SDR rbh
scnpilot_solids1_trim150_scaffold_6_10
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9824..10030
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FM17_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV15444.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_6_11
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10308..11423
DNA (1116bp) protein (372aa)
nitrate ABC transporter substrate-binding protein n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B663DD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH86940.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
scnpilot_solids1_trim150_scaffold_6_12
RBG_13_Chloroflexi_66_10_curated, Chloroflexi, Bacteria

Not on your lists

11548..12966
DNA (1419bp) protein (473aa)
Amidohydrolase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TYV8_9CHLR rbh
guanine deaminase, putative rbh
Tax=RBG_13_Chloroflexi_66_10_curated
scnpilot_solids1_trim150_scaffold_6_13
marine actinobacterium MedAcidi-G1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13082..13822
DNA (741bp) protein (247aa)
ABC transporter ATP-binding protein n=1 Tax=Corynebacterium-like bacterium B27 RepID=UPI0003B6FB30 rbh
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KIE51480.1}; TaxID=1550399 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G1.;"
ssuB; nitrate/sulfonate/bicarbonate ABC transporter ATPase; K02049 NitT/TauT family transport system ATP-binding protein rbh
scnpilot_solids1_trim150_scaffold_6_14
marine actinobacterium MedAcidi-G1, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13822..14685
DNA (864bp) protein (288aa)
ABC transporter n=1 Tax=Rhodococcus rhodnii LMG 5362 RepID=R7WHU0_9NOCA
Nitrate ABC transporter permease {ECO:0000313|EMBL:KIE51521.1}; TaxID=1550399 species="Bacteria; Actinobacteria.;" source="marine actinobacterium MedAcidi-G1.;"
ABC transporter permease; K02050 NitT/TauT family transport system permease protein
scnpilot_solids1_trim150_scaffold_6_15
BJP_IG2158_Anaerolineales_38_74, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

14843..15871
DNA (1029bp) protein (343aa)
Putative glyoxylate reductase n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I0Q1_CALAS
putative glyoxylate reductase
Tax=BJP_IG2158_Anaerolineales_38_74
scnpilot_solids1_trim150_scaffold_6_16
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15887..16768)
DNA (882bp) protein (294aa)
Transcriptional regulator, LysR family n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UGP0_SINMW
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABR62820.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
scnpilot_solids1_trim150_scaffold_6_17
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16913..18106
DNA (1194bp) protein (398aa)
Uncharacterized protein n=1 Tax=Janthinobacterium sp. HH01 RepID=L9PPR4_9BURK
Uncharacterized protein {ECO:0000313|EMBL:ELX12843.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_6_18
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18151..19062
DNA (912bp) protein (304aa)
Polysaccharide deacetylase family protein 2 n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LNR5_BURGS rbh
Chitin deacetylase {ECO:0000313|EMBL:EZQ14217.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
polysaccharide deacetylase family protein 2 rbh
scnpilot_solids1_trim150_scaffold_6_19
Candidatus Nitrospira defluvii, Nitrospira, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

19067..20575
DNA (1509bp) protein (503aa)
pepA; leucyl aminopeptidase (EC:3.4.11.1); K01255 leucyl aminopeptidase [EC:3.4.11.1]
Probable cytosol aminopeptidase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8P9W7_9BACT
Probable cytosol aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; Leucyl aminopeptidase {ECO:0000256|HAMAP-Rule:MF_00181}; TaxID=330214 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Nitrospira.;" source="Candidatus Nitrospira defluvii.;"
scnpilot_solids1_trim150_scaffold_6_20
RBG_16_NC10_65_8_curated, NC10, Bacteria

Not on your lists

20587..20985
DNA (399bp) protein (133aa)
endoribonuclease L-PSP n=1 Tax=Mastigocladopsis repens RepID=UPI0002EB0175
hypothetical protein; K07567 TdcF protein
Tax=RBG_16_NC10_65_8_curated
scnpilot_solids1_trim150_scaffold_6_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20987..22387
DNA (1401bp) protein (467aa)
Putative Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A) {ECO:0000313|EMBL:KFC73087.1}; EC=6.3.5.- {ECO:0000313|EMBL:KFC73087.1};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
amidase (EC:3.5.1.-) rbh
Amidase n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X156_9BURK rbh
scnpilot_solids1_trim150_scaffold_6_22
Herbaspirillum seropedicae, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22527..23147
DNA (621bp) protein (207aa)
mhpD; 2-keto-4-pentenoate hydratase (EC:4.2.1.80)
2-keto-4-pentenoate hydratase protein {ECO:0000313|EMBL:ADJ64831.1}; EC=4.2.1.80 {ECO:0000313|EMBL:ADJ64831.1};; TaxID=757424 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum seropedicae (strain SmR1).;"
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00035F798F
scnpilot_solids1_trim150_scaffold_6_23
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23256..24422
DNA (1167bp) protein (389aa)
class V aminotransferase; K00830 alanine-glyoxylate transaminase / serine-glyoxylate transaminase / serine-pyruvate transaminase [EC:2.6.1.44 2.6.1.45 2.6.1.51]
Aminotransferase class V n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A4G2_STAND
Aminotransferase class V {ECO:0000313|EMBL:ADH89825.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
scnpilot_solids1_trim150_scaffold_6_24
Pseudomonas sp. UW4, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24492..24890
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037B89B2
glcG; GlcG protein
GlcG protein {ECO:0000313|EMBL:AFY20315.1}; TaxID=1207075 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. UW4.;"
scnpilot_solids1_trim150_scaffold_6_25
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25072..26790)
DNA (1719bp) protein (573aa)
dihydroxyacid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9] rbh
Dihydroxyacid dehydratase {ECO:0000313|EMBL:ABM96604.1}; EC=4.2.1.9 {ECO:0000313|EMBL:ABM96604.1};; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
Dihydroxyacid dehydratase n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SM15_METPP rbh
scnpilot_solids1_trim150_scaffold_6_26
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26783..28117)
DNA (1335bp) protein (445aa)
FAD dependent oxidoreductase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UI19_METS4 rbh
FAD dependent oxidoreductase rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:ACA15851.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
scnpilot_solids1_trim150_scaffold_6_27
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28323..29015
DNA (693bp) protein (231aa)
GntR family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MTY8_9BURK
GntR family transcriptional regulator {ECO:0000313|EMBL:EIK92678.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
GntR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_6_28
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29528..30730)
DNA (1203bp) protein (401aa)
methionine-gamma-lyase (EC:4.4.1.11) rbh
Methionine-gamma-lyase {ECO:0000313|EMBL:AGT10667.1}; EC=4.4.1.11 {ECO:0000313|EMBL:AGT10667.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Methionine-gamma-lyase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XZF0_PARAH rbh
scnpilot_solids1_trim150_scaffold_6_29
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31557..33155
DNA (1599bp) protein (533aa)
FAD dependent oxidoreductase (EC:1.-.-.-) rbh
FAD dependent oxidoreductase {ECO:0000313|EMBL:AGT10668.1}; EC=1.-.-.- {ECO:0000313|EMBL:AGT10668.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
FAD dependent oxidoreductase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YGS5_PARAH rbh
scnpilot_solids1_trim150_scaffold_6_30
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33247..34086
DNA (840bp) protein (280aa)
Transcriptional regulator, IclR family n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XT65_PARAH
transcriptional regulator, IclR family
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AGT10669.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Displaying items 1-30 of 301 in total

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