ggKbase home page

scnpilot_solids1_trim150_scaffold_62

Search features with annotation key words

Displaying items 1-30 of 131 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_62_1
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..642
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FEL6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV14770.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_62_2
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(667..3783)
DNA (3117bp) protein (1039aa)
excinuclease ABC subunit B n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002EE0078 rbh
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
excinuclease ABC subunit B; K03702 excinuclease ABC subunit B rbh
scnpilot_solids1_trim150_scaffold_62_3
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3888..4145)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037BD810
Putative uncharacterized protein {ECO:0000313|EMBL:EHH11185.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein; K15383 MtN3 and saliva related transmembrane protein
scnpilot_solids1_trim150_scaffold_62_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4295..4633)
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HVT4_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK55159.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_62_5
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5035..5247
DNA (213bp) protein (71aa)
cold-shock protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000380D88B
cold-shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
'Cold-shock' DNA-binding domain protein {ECO:0000313|EMBL:AID32042.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
scnpilot_solids1_trim150_scaffold_62_6
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5562..5774
DNA (213bp) protein (71aa)
Cold-shock DNA-binding protein family n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GE8_MESSB
cold-shock DNA-binding protein family protein; K03704 cold shock protein (beta-ribbon, CspA family)
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ABG63527.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
scnpilot_solids1_trim150_scaffold_62_7
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5873..6550)
DNA (678bp) protein (226aa)
PREDICTED: persulfide dioxygenase ETHE1, mitochondrial-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C179FE rbh
Hydrolase {ECO:0000313|EMBL:EHH11200.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
Zn-dependent hydrolase, glyoxylase
scnpilot_solids1_trim150_scaffold_62_8
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6602..6892)
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPA8_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57380.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_62_9
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7044..7940)
DNA (897bp) protein (299aa)
Branched-chain amino-acid aminotransferase {ECO:0000313|EMBL:CDX15839.1}; EC=2.6.1.42 {ECO:0000313|EMBL:CDX15839.1};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
branched-chain amino acid aminotransferase; K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] rbh
UPI0003D021B1 related cluster n=1 Tax=unknown RepID=UPI0003D021B1 rbh
scnpilot_solids1_trim150_scaffold_62_10
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8228..8809
DNA (582bp) protein (194aa)
MarR family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI000375C7F5
MarR family transcriptional regulator {ECO:0000313|EMBL:ESX78634.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_62_11
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8821..9525
DNA (705bp) protein (235aa)
UPI0003CE8A21 related cluster n=1 Tax=unknown RepID=UPI0003CE8A21
Chemotaxis protein CheY {ECO:0000313|EMBL:ESY62838.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
winged helix family two component transcriptional regulator; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR
scnpilot_solids1_trim150_scaffold_62_12
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9653..11116
DNA (1464bp) protein (488aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ATPase domain-containing protein; K07638 two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ [EC:2.7.13.3]
UPI0003CEA215 related cluster n=1 Tax=unknown RepID=UPI0003CEA215
scnpilot_solids1_trim150_scaffold_62_13
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11283..11642)
DNA (360bp) protein (120aa)
Chaperone n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HPA0_9RHIZ
Chaperone {ECO:0000313|EMBL:EHK57486.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
chaperone; K06878 tRNA-binding protein
scnpilot_solids1_trim150_scaffold_62_14
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11651..12151)
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002ED5100 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV11322.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
scnpilot_solids1_trim150_scaffold_62_15
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12484..12798)
DNA (315bp) protein (105aa)
Mll2675 protein n=1 Tax=Rhizobium loti (strain MAFF303099) RepID=Q98HX0_RHILO
hypothetical protein; K09806 hypothetical protein
Mll2675 protein {ECO:0000313|EMBL:BAB49746.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
scnpilot_solids1_trim150_scaffold_62_16
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13131..13994
DNA (864bp) protein (288aa)
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-] rbh
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
Prolipoprotein diacylglyceryl transferase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GD3_MESSB rbh
scnpilot_solids1_trim150_scaffold_62_17
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13978..15054
DNA (1077bp) protein (359aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP94_9RHIZ rbh
Putative uncharacterized protein {ECO:0000313|EMBL:EHK57480.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_62_18
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15131..15826)
DNA (696bp) protein (232aa)
Putative transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J3C4D0_9RHIZ rbh
Transcriptional regulator, HxlR family {ECO:0000313|EMBL:EUC01260.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
HxlR family transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_62_19
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16010..17431
DNA (1422bp) protein (474aa)
(R)-6-hydroxynicotine oxidase (EC:1.5.3.6) rbh
FAD/FMN-dependent dehydrogenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z1I0_9RHIZ rbh
FAD/FMN-dependent dehydrogenase {ECO:0000313|EMBL:EIM30072.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
scnpilot_solids1_trim150_scaffold_62_20
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17599..18393
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EV13_9RHIZ
Laccase domain protein {ECO:0000256|RuleBase:RU361274}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
uncharacterized protein, YfiH family
scnpilot_solids1_trim150_scaffold_62_21
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18399..19550
DNA (1152bp) protein (384aa)
Xaa-Pro dipeptidase n=1 Tax=Rhizobium loti RepID=UPI00036B568A rbh
Peptidase M24 {ECO:0000313|EMBL:CDX15875.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
hydrolase/peptidase rbh
scnpilot_solids1_trim150_scaffold_62_22
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19629..20210
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YAP2_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH11216.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_62_23
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20292..20531
DNA (240bp) protein (80aa)
UPI0003CE4E6A related cluster n=1 Tax=unknown RepID=UPI0003CE4E6A
Uncharacterized protein {ECO:0000313|EMBL:ESY78231.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_62_24
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20528..20821
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EV61_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV03616.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
spsF; hypothetical protein
scnpilot_solids1_trim150_scaffold_62_25
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20949..21881
DNA (933bp) protein (311aa)
ribose-phosphate pyrophosphokinase; K00948 ribose-phosphate pyrophosphokinase [EC:2.7.6.1] rbh
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583, ECO:0000313|EMBL:ABG63547.1}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae
Ribose-phosphate pyrophosphokinase n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11GC8_MESSB rbh
scnpilot_solids1_trim150_scaffold_62_26
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


22114..22767
DNA (654bp) protein (218aa)
50S ribosomal protein L25 n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP86_9RHIZ rbh
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; K02897 large subunit ribosomal protein L25 rbh
scnpilot_solids1_trim150_scaffold_62_27
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22792..23514
DNA (723bp) protein (241aa)
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673};; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29]
UPI0003CE8C24 related cluster n=1 Tax=unknown RepID=UPI0003CE8C24
scnpilot_solids1_trim150_scaffold_62_28
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23618..23872
DNA (255bp) protein (85aa)
Uncharacterized protein {ECO:0000313|EMBL:KFB09487.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
scnpilot_solids1_trim150_scaffold_62_29
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23859..24308
DNA (450bp) protein (150aa)
PilT-like protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HP83_9RHIZ
PilT-like protein {ECO:0000313|EMBL:EHK57469.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
PilT protein domain protein
scnpilot_solids1_trim150_scaffold_62_30
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24317..25420
DNA (1104bp) protein (368aa)
Ribosome-binding ATPase YchF n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FM97_9RHIZ rbh
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
GTP-binding protein YchF rbh
Displaying items 1-30 of 131 in total

View Taxonomy