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scnpilot_solids1_trim150_scaffold_179

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_179_1
unknown

Not on your lists

3..83
DNA (81bp) protein (27aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_179_2
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(68..1555)
DNA (1488bp) protein (496aa)
Blr0871 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89W22_BRADU rbh
hypothetical protein rbh
Blr0871 protein {ECO:0000313|EMBL:BAC46136.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
scnpilot_solids1_trim150_scaffold_179_3
Mesorhizobium sp. LSJC277A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1707..5186)
DNA (3480bp) protein (1160aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=1287334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC277A00.;"
UPI0003CE3274 related cluster n=1 Tax=unknown RepID=UPI0003CE3274 rbh
carbamoyl-phosphate synthase, large subunit rbh
scnpilot_solids1_trim150_scaffold_179_4
Mesorhizobium sp. L103C119B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5371..6438)
DNA (1068bp) protein (356aa)
UPI0003CFF8B8 related cluster n=1 Tax=unknown RepID=UPI0003CFF8B8
Peptide-binding protein {ECO:0000313|EMBL:ESZ70371.1}; TaxID=1287085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C119B0.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_179_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6741..7499
DNA (759bp) protein (253aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_01401};; Peptide-methionine (S)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
msrAe; peptide methionine sulfoxide reductase; K07304 peptide-methionine (S)-S-oxide reductase [EC:1.8.4.11] rbh
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000369EF0F rbh
scnpilot_solids1_trim150_scaffold_179_6
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7563..8249)
DNA (687bp) protein (229aa)
UPI0003CEA776 related cluster n=1 Tax=unknown RepID=UPI0003CEA776
Dihydrofolate reductase {ECO:0000313|EMBL:ESW81467.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
deaminase-reductase domain-containing protein
scnpilot_solids1_trim150_scaffold_179_7
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8363..8704)
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036B2243
ArsR family transcriptional regulator {ECO:0000313|EMBL:KFL26690.1}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
regulatory protein
scnpilot_solids1_trim150_scaffold_179_8
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9082..10263
DNA (1182bp) protein (394aa)
Major facilitator superfamily protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6Y3W3_9RHIZ rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CDX45747.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
major facilitator superfamily protein rbh
scnpilot_solids1_trim150_scaffold_179_9
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10434..10628
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7YFU6_MESOW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ESY65635.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
scnpilot_solids1_trim150_scaffold_179_10
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10830..11759
DNA (930bp) protein (310aa)
flagellin biosynthesis protein FlgM n=1 Tax=Hoeflea sp. 108 RepID=UPI00037EC767
Flagellin biosynthesis protein FlgM {ECO:0000313|EMBL:ESW81464.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
zinc protease; K07054
scnpilot_solids1_trim150_scaffold_179_11
Mesorhizobium sp. LSHC426A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11820..12203)
DNA (384bp) protein (128aa)
UPI0003CECF50 related cluster n=1 Tax=unknown RepID=UPI0003CECF50
DNA-binding protein {ECO:0000313|EMBL:ESX49305.1}; TaxID=1287298 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC426A00.;"
helix-turn-helix domain-containing protein
scnpilot_solids1_trim150_scaffold_179_12
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12522..13721)
DNA (1200bp) protein (400aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
carbamoyl phosphate synthase small subunit (EC:6.3.5.5); K01956 carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase small chain n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FH74_9RHIZ
scnpilot_solids1_trim150_scaffold_179_13
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13905..14363
DNA (459bp) protein (153aa)
UPI0003CFC9F6 related cluster n=1 Tax=unknown RepID=UPI0003CFC9F6
Uncharacterized protein {ECO:0000313|EMBL:ESZ18793.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein; K09117 hypothetical protein
scnpilot_solids1_trim150_scaffold_179_14
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

Not on your lists

14572..15774
DNA (1203bp) protein (401aa)
PHP domain protein id=4699689 bin=GWC2_Syntrophobacterales_56_13 species=Syntrophothermus lipocalidus genus=Syntrophothermus taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_Syntrophobacterales_56_13 organism_group=Deltaproteobacteria organism_desc=Good +
hypothetical protein
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
scnpilot_solids1_trim150_scaffold_179_15
Mesorhizobium sp. L2C089B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15839..17200)
DNA (1362bp) protein (454aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1287120 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C089B000.;"
Histidine kinase n=1 Tax=Mesorhizobium sp. L2C089B000 RepID=V7H1Y8_9RHIZ
sensory histidine protein kinase
scnpilot_solids1_trim150_scaffold_179_16
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17178..17855)
DNA (678bp) protein (226aa)
XRE family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI0003763AF2
DNA-binding response regulator in two-component regulatory system with CusS {ECO:0000313|EMBL:CDX26110.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
response regulator receiver
scnpilot_solids1_trim150_scaffold_179_17
unknown

Not on your lists

18013..18423
DNA (411bp) protein (137aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_179_18
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18696..19025
DNA (330bp) protein (110aa)
Propeptide PepSY amd peptidase M4 n=1 Tax=Acidocella sp. MX-AZ02 RepID=K5YGU6_9PROT
Propeptide PepSY amd peptidase M4 {ECO:0000313|EMBL:KDB04665.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
propeptide PepSY amd peptidase M4
scnpilot_solids1_trim150_scaffold_179_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19234..20034
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4J6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI52876.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_179_20
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20086..20556)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4Y4_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EFI53014.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
membrane protein
scnpilot_solids1_trim150_scaffold_179_21
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20604..21146
DNA (543bp) protein (181aa)
UPI0003CDE7F1 related cluster n=1 Tax=unknown RepID=UPI0003CDE7F1
Phosphoesterase {ECO:0000313|EMBL:ESY96578.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_179_22
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21166..21963)
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABH3_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EXI88506.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_179_23
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22105..22818)
DNA (714bp) protein (238aa)
LpsC {ECO:0000313|EMBL:CDH85504.1}; EC=2.-.-.- {ECO:0000313|EMBL:CDH85504.1};; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
lipopolysaccharide biosynthesis protein n=1 Tax=Rhizobium meliloti RepID=UPI0003661364
lpsC; LpsC
scnpilot_solids1_trim150_scaffold_179_24
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23298..24299
DNA (1002bp) protein (334aa)
UPI0003D02723 related cluster n=1 Tax=unknown RepID=UPI0003D02723
Iron ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESZ26863.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
family 1 extracellular solute-binding protein; K02012 iron(III) transport system substrate-binding protein
scnpilot_solids1_trim150_scaffold_179_25
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24390..25979
DNA (1590bp) protein (530aa)
Fe(3+)-transport system permease protein sfuB n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EZY4_9RHIZ rbh
Fe(3+)-transport system permease protein sfuB {ECO:0000313|EMBL:CCV05116.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
binding-protein-dependent transport system inner membrane protein; K02011 iron(III) transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_179_26
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25976..27049
DNA (1074bp) protein (358aa)
Fe(3+) ions import ATP-binding protein FbpC {ECO:0000256|HAMAP-Rule:MF_01706}; EC=3.6.3.30 {ECO:0000256|HAMAP-Rule:MF_01706};; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
ABC transporter; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30]
UPI0003CF20B2 related cluster n=1 Tax=unknown RepID=UPI0003CF20B2
scnpilot_solids1_trim150_scaffold_179_27
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27102..27311)
DNA (210bp) protein (70aa)
UPI0003CDF29F related cluster n=1 Tax=unknown RepID=UPI0003CDF29F
Membrane protein {ECO:0000313|EMBL:ESY93374.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_179_28
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27308..28063)
DNA (756bp) protein (252aa)
UPI0003D02618 related cluster n=1 Tax=unknown RepID=UPI0003D02618
Uncharacterized protein {ECO:0000313|EMBL:CDX38281.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_179_29
unknown

Not on your lists

28140..28346
DNA (207bp) protein (69aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_179_30
unknown

Not on your lists

28395..28484
DNA (90bp) protein (30aa)

This feature has no annotations

Displaying items 1-30 of 61 in total

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