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scnpilot_solids1_trim150_scaffold_205

Search features with annotation key words

Displaying items 1-30 of 105 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_205_1
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

624..2042
DNA (1419bp) protein (473aa)
cydA; cytochrome d ubiquinol oxidase subunit 1 (EC:1.10.3.-); K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-] rbh
Cytochrome d ubiquinol oxidase subunit 1 {ECO:0000313|EMBL:AEI07982.1}; EC=1.10.3.- {ECO:0000313|EMBL:AEI07982.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Cytochrome D ubiquinol oxidase subunit 1 n=2 Tax=Oligotropha carboxidovorans RepID=B6JD52_OLICO rbh
scnpilot_solids1_trim150_scaffold_205_2
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2047..3051
DNA (1005bp) protein (335aa)
cytochrome d ubiquinol oxidase subunit II; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-] rbh
Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q12ZZ3_RHOPS rbh
Cytochrome d ubiquinol oxidase, subunit II {ECO:0000313|EMBL:ABE41596.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
scnpilot_solids1_trim150_scaffold_205_3
unknown

Not on your lists

3051..3170
DNA (120bp) protein (40aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_205_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3250..4149
DNA (900bp) protein (300aa)
methylenetetrahydrofolate dehydrogenase (EC:1.5.1.5 3.5.4.9); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9]
5,10-methylene-tetrahydrofolate dehydrogenase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DBB6AF
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
scnpilot_solids1_trim150_scaffold_205_5
unknown

Not on your lists

4161..4274
DNA (114bp) protein (38aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_205_6
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4286..5248
DNA (963bp) protein (321aa)
Transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HXP3_9RHIZ rbh
Transcriptional regulator {ECO:0000313|EMBL:EHK54520.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain rbh
scnpilot_solids1_trim150_scaffold_205_7
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5294..6340
DNA (1047bp) protein (349aa)
Transcriptional regulator GntR n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTW1_9RHIZ rbh
Transcriptional regulator GntR {ECO:0000313|EMBL:EHK55848.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
LacI family transcriptional regulator; K06145 LacI family transcriptional regulator, gluconate utilization system Gnt-I transcriptional repressor rbh
scnpilot_solids1_trim150_scaffold_205_8
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6567..7688
DNA (1122bp) protein (374aa)
ABC-type sugar transport system, periplasmic component n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KK11_MESAW rbh
ABC-type sugar transport system, periplasmic component rbh
ABC-type sugar transport system, periplasmic component {ECO:0000313|EMBL:AGB45692.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
scnpilot_solids1_trim150_scaffold_205_9
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7756..9312
DNA (1557bp) protein (519aa)
Ribose import ATP-binding protein RbsA {ECO:0000256|HAMAP-Rule:MF_01716}; EC=3.6.3.17 {ECO:0000256|HAMAP-Rule:MF_01716};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ribose ABC transporter ATP-binding protein; K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
ABC transporter n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTV9_9RHIZ rbh
scnpilot_solids1_trim150_scaffold_205_10
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9309..10289
DNA (981bp) protein (327aa)
UPI0003CFAFAF related cluster n=1 Tax=unknown RepID=UPI0003CFAFAF rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:ESZ23629.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
inner-membrane translocator rbh
scnpilot_solids1_trim150_scaffold_205_11
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10286..11275
DNA (990bp) protein (330aa)
UPI0003D05F3E related cluster n=1 Tax=unknown RepID=UPI0003D05F3E rbh
Putative sugar ABC transporter, permease protein ribose ABC transporter rbsC-like {ECO:0000313|EMBL:CDX33205.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
permease component of ribose/xylose/arabinose/galactoside ABC-type transporters rbh
scnpilot_solids1_trim150_scaffold_205_12
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11305..12219
DNA (915bp) protein (305aa)
Gluconolactonase (EC:3.1.1.17); K01053 gluconolactonase [EC:3.1.1.17] rbh
gluconolactonase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E07621 rbh
Gluconolactonase {ECO:0000313|EMBL:KDB01619.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
scnpilot_solids1_trim150_scaffold_205_13
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12241..13608)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5EXK4_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:CCV09822.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
cytochrome P450 rbh
scnpilot_solids1_trim150_scaffold_205_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13683..14057)
DNA (375bp) protein (125aa)
Putative fluoride ion transporter CrcB n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9SHR3_9RHOB
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
camphor resistance protein CrcB; K06199 CrcB protein
scnpilot_solids1_trim150_scaffold_205_15
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14379..16826
DNA (2448bp) protein (816aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
gyrB; DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] rbh
DNA gyrase subunit B n=1 Tax=Nitratireductor indicus C115 RepID=K2N9E6_9RHIZ rbh
scnpilot_solids1_trim150_scaffold_205_16
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(16851..17288)
DNA (438bp) protein (146aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000368329B
Tax=RBG_16_Armatimonadetes_67_12_curated
scnpilot_solids1_trim150_scaffold_205_17
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17409..18710)
DNA (1302bp) protein (434aa)
TRAP transporter, DctM subunit n=1 Tax=Microvirga sp. WSM3557 RepID=I4YPR3_9RHIZ rbh
TRAP transporter, DctM subunit {ECO:0000313|EMBL:EIM25955.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
TRAP dicarboxylate transporter subunit DctM rbh
scnpilot_solids1_trim150_scaffold_205_18
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18707..19162)
DNA (456bp) protein (152aa)
Tripartite ATP-independent periplasmic transporter DctQ n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HTZ5_9RHIZ
Tripartite ATP-independent periplasmic transporter DctQ {ECO:0000313|EMBL:EHK55789.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
putative TRAP-type C4-dicarboxylate transport system, small permease subunit
scnpilot_solids1_trim150_scaffold_205_19
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19316..20302)
DNA (987bp) protein (329aa)
UPI0003CFA02B related cluster n=1 Tax=unknown RepID=UPI0003CFA02B rbh
C4-dicarboxylate ABC transporter {ECO:0000313|EMBL:ESZ21504.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
TRAP-type C4-dicarboxylate transport system, periplasmic component rbh
scnpilot_solids1_trim150_scaffold_205_20
Devosia sp. LC5, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20363..21319)
DNA (957bp) protein (319aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222};; TaxID=1502724 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. LC5.;"
shikimate 5-dehydrogenase; K00014 shikimate dehydrogenase [EC:1.1.1.25]
UPI0003D01CC9 related cluster n=1 Tax=unknown RepID=UPI0003D01CC9 rbh
scnpilot_solids1_trim150_scaffold_205_21
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21426..22097
DNA (672bp) protein (224aa)
UPI0003CFD7F8 related cluster n=1 Tax=unknown RepID=UPI0003CFD7F8 rbh
TetR family transcriptional regulator {ECO:0000313|EMBL:KKB85193.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
transcriptional regulator, TetR family rbh
scnpilot_solids1_trim150_scaffold_205_22
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22491..25517
DNA (3027bp) protein (1009aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] rbh
DNA polymerase I n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002E6B684 rbh
DNA polymerase I {ECO:0000313|EMBL:ADV10857.1}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
scnpilot_solids1_trim150_scaffold_205_23
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25717..26508
DNA (792bp) protein (264aa)
High-affinity branched-chain amino acid transport protein (ABC superfamily, ATP-binding) n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0T894_9BRAD rbh
High-affinity branched-chain amino acid transport ATP-binding protein BraF {ECO:0000313|EMBL:GAJ37564.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
high-affinity branched-chain amino acid transport protein, ABC superfamily, ATP-binding rbh
scnpilot_solids1_trim150_scaffold_205_24
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26505..27218
DNA (714bp) protein (238aa)
livF; high-affinity branched-chain amino acid transport protein (EC:3.6.3.-); K01996 branched-chain amino acid transport system ATP-binding protein rbh
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ES16_BRASB rbh
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_solids1_trim150_scaffold_205_25
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27224..28099
DNA (876bp) protein (292aa)
Inner-membrane translocator n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q133F9_RHOPS rbh
High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:GAJ37566.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_205_26
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28101..29120
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NQ89_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS32542.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_205_27
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29138..30358
DNA (1221bp) protein (407aa)
branched-chain amino acid ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI00035DE850
Extracellular ligand-binding receptor {ECO:0000313|EMBL:EJZ35227.1}; Flags: Fragment;; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
leucine/isoleucine/valine-binding protein precursor
scnpilot_solids1_trim150_scaffold_205_28
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30683..31522)
DNA (840bp) protein (280aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2); K00286 pyrroline-5-carboxylate reductase [EC:1.5.1.2]
PREDICTED: pyrroline-5-carboxylate reductase-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C0FD34
scnpilot_solids1_trim150_scaffold_205_29
Pseudomonas knackmussii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31595..32056)
DNA (462bp) protein (154aa)
Hypothetical membrane protein {ECO:0000313|EMBL:CDF83119.1}; TaxID=1301098 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas knackmussii (strain DSM 6978 / LMG 23759 / B13).;"
scnpilot_solids1_trim150_scaffold_205_30
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32147..32770)
DNA (624bp) protein (208aa)
Phospholipase/Carboxylesterase n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X482_OCHA4
phospholipase/carboxylesterase; K06999 phospholipase/carboxylesterase
Phospholipase/Carboxylesterase {ECO:0000313|EMBL:ABS16036.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
Displaying items 1-30 of 105 in total

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