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scnpilot_solids1_trim150_scaffold_316

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_316_1
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..580)
DNA (579bp) protein (193aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003751ECA
succinylglutamate desuccinylase/aspartoacylase; K06987
Succinylglutamate desuccinylase/aspartoacylase {ECO:0000313|EMBL:ACC76441.1}; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phymatum (strain DSM 17167 / STM815).;"
scnpilot_solids1_trim150_scaffold_316_2
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(590..1339)
DNA (750bp) protein (250aa)
UPI0003CF93EF related cluster n=1 Tax=unknown RepID=UPI0003CF93EF rbh
Arginine ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESY65551.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
ABC transporter rbh
scnpilot_solids1_trim150_scaffold_316_3
Mesorhizobium opportunistum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1363..2022)
DNA (660bp) protein (220aa)
ABC transporter n=1 Tax=Rhizobium loti RepID=UPI00035EB71A rbh
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein rbh
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:AEH87292.1}; TaxID=536019 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075).;"
scnpilot_solids1_trim150_scaffold_316_4
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2012..2671)
DNA (660bp) protein (220aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y4H3_MESOW rbh
ABC transporter {ECO:0000313|EMBL:CDX51977.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_316_5
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2680..3555)
DNA (876bp) protein (292aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003671A3F rbh
Amino acid ABC transporte {ECO:0000313|EMBL:CDX12018.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
ectoine/hydroxyectoine ABC transporter solute-binding protein rbh
scnpilot_solids1_trim150_scaffold_316_6
Ketogulonicigenium vulgare, Ketogulonicigenium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3779..4105)
DNA (327bp) protein (109aa)
Uncharacterized protein n=2 Tax=Ketogulonicigenium vulgare RepID=E3F5D8_KETVY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO44182.1}; TaxID=880591 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ketogulonicigenium.;" source="Ketogulonicigenium vulgare (strain Y25).;"
scnpilot_solids1_trim150_scaffold_316_7
Mesorhizobium sp. LNHC221B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4682..5122)
DNA (441bp) protein (147aa)
UPI0003CEF5DF related cluster n=1 Tax=unknown RepID=UPI0003CEF5DF
Uncharacterized protein {ECO:0000313|EMBL:ESY80820.1}; TaxID=1287233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC221B00.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_316_8
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5265..5432)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EYT4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV09125.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_316_9
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6005..8617)
DNA (2613bp) protein (871aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens (strain SBW25) RepID=C3K879_PSEFS rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CAY48129.1}; TaxID=216595 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens (strain SBW25).;"
scnpilot_solids1_trim150_scaffold_316_10
Mesorhizobium sp. L2C067A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8618..9601)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B797
Uncharacterized protein {ECO:0000313|EMBL:ESZ35912.1}; TaxID=1287106 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C067A000.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_316_11
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9598..10647)
DNA (1050bp) protein (350aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B798 rbh
Uncharacterized protein {ECO:0000313|EMBL:KIA82184.1}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_316_12
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10650..11678)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262B799
Uncharacterized protein {ECO:0000313|EMBL:KIA82185.1}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_316_13
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11675..13000)
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Pseudomonas fluorescens (strain SBW25) RepID=C3K875_PSEFS rbh
Uncharacterized protein {ECO:0000313|EMBL:KIA82186.1}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_316_14
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13414..13644)
DNA (231bp) protein (77aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036BD2F4
Uncharacterized protein {ECO:0000313|EMBL:EJZ30602.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
scnpilot_solids1_trim150_scaffold_316_15
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13649..13930)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) RepID=Q3J1F8_RHOS4
hypothetical protein
Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequence {ECO:0000313|EMBL:ABA79376.2}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
scnpilot_solids1_trim150_scaffold_316_16
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13966..14889)
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0SXW6_CAUSK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABZ70289.1}; Flags: Precursor;; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
scnpilot_solids1_trim150_scaffold_316_17
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15347..16270)
DNA (924bp) protein (308aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003815097
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAI99151.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
scnpilot_solids1_trim150_scaffold_316_18
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16585..17622)
DNA (1038bp) protein (346aa)
DNA primase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0G3D5_9SPHN rbh
DNA primase {ECO:0000313|EMBL:EQA98170.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_316_19
Sphingobium japonicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17622..21941)
DNA (4320bp) protein (1440aa)
methylase n=1 Tax=Afipia birgiae RepID=UPI0002D25EAE
putative methylase/helicase
Putative methylase/helicase {ECO:0000313|EMBL:BAI96857.1}; TaxID=452662 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium japonicum (strain NBRC 101211 / UT26S).;"
scnpilot_solids1_trim150_scaffold_316_20
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22126..22392)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJR5_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68258.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids1_trim150_scaffold_316_21
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22389..22805)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IJR6_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS68259.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_solids1_trim150_scaffold_316_22
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22901..25051)
DNA (2151bp) protein (717aa)
plasmid partitioning protein ParB n=1 Tax=Afipia birgiae RepID=UPI0002E7FF8C rbh
Plasmid partitioning protein ParB {ECO:0000313|EMBL:EQA98175.1}; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
ParB domain-containing protein nuclease; K03497 chromosome partitioning protein, ParB family
scnpilot_solids1_trim150_scaffold_316_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25223..26416)
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00036C0966
Uncharacterized protein {ECO:0000313|EMBL:CEG10590.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_316_trna_1
unknown

Not on your lists

comp(26867..26940)
DNA (74bp)
transferRNA Arg
scnpilot_solids1_trim150_scaffold_316_24
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27140..28630)
DNA (1491bp) protein (497aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJG9_9RHIZ rbh
signal transduction histidine kinase
scnpilot_solids1_trim150_scaffold_316_25
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28665..30104)
DNA (1440bp) protein (480aa)
pyridine nucleotide-disulphide oxidoreductase dimerisation region; K00520 mercuric reductase [EC:1.16.1.1] rbh
Pyridine nucleotide-disulfide oxidoreductase dimerization region n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJH0_9RHIZ rbh
Pyridine nucleotide-disulfide oxidoreductase dimerization region {ECO:0000313|EMBL:EHK59135.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
scnpilot_solids1_trim150_scaffold_316_26
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30136..30951)
DNA (816bp) protein (272aa)
Transmembrane protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MEX3_9RHIZ
Transmembrane protein {ECO:0000313|EMBL:EKF20641.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_316_27
Mesorhizobium sp. LNJC372A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31657..32040
DNA (384bp) protein (128aa)
Ribonuclease P protein component {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143752}; Short=RNase P protein {ECO:0000256|HAMAP-Rule:MF_00227};; Short=RNaseP protein {ECO:0000256|HAMAP-Rule:MF_00227};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00227, ECO:0000256|SAAS:SAAS00143815};; Protein C5 {ECO:0000256|HAMAP-Rule:MF_00227}; TaxID=1287256 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC372A00.;"
ribonuclease P protein component; K03536 ribonuclease P protein component [EC:3.1.26.5]
Ribonuclease P n=5 Tax=Mesorhizobium RepID=V7EU96_9RHIZ
scnpilot_solids1_trim150_scaffold_316_28
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32049..32606
DNA (558bp) protein (186aa)
UPI0003CF4344 related cluster n=1 Tax=unknown RepID=UPI0003CF4344
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
membrane protein insertase, YidC/Oxa1 family domain containing; K03217 preprotein translocase subunit YidC
scnpilot_solids1_trim150_scaffold_316_29
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32690..33910
DNA (1221bp) protein (407aa)
insertase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036F7C52
Membrane protein insertase YidC {ECO:0000256|HAMAP-Rule:MF_01810, ECO:0000256|SAAS:SAAS00003942}; Foldase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane integrase YidC {ECO:0000256|HAMAP-Rule:MF_01810}; Membrane protein YidC {ECO:0000256|HAMAP-Rule:MF_01810}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
YidC/Oxa1 family membrane protein; K03217 preprotein translocase subunit YidC
Displaying items 1-30 of 44 in total

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