ggKbase home page

scnpilot_solids1_trim150_scaffold_79_27

Organism: SCNPILOT_SOLID_1_TRIM150_Rhizobiales_63_14

near complete RP 51 / 55 MC: 4 BSCG 51 / 51 MC: 3 ASCG 11 / 38
Location: comp(24690..25550)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HLV5_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 79.5
  • Coverage: 283.0
  • Bit_score: 458
  • Evalue 3.70e-126
  • rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.5
  • Coverage: 283.0
  • Bit_score: 458
  • Evalue 5.20e-126
RNA polymerase sigma-32 subunit RpoH; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 75.1
  • Coverage: 285.0
  • Bit_score: 424
  • Evalue 3.20e-116
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Mesorhizobium alhagi → Mesorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 861
ATGAATGAAGACTCGGCCAGGCGAAGCATGATCCAGGCGGCAATGCGGGCTCCCTATCTCGAGCGGGGCGAAGAGCACGATCTCGCCGTACGCTGGAAGGAAAAGCACGACCAGGAGGCGCTTCATCGCATTACCACGGCGCATATGCGTCTGGTCATCTCCATGGCGGCGAAATTCCGTCATTTCGGCTTGTCGATGAGCGACCTCATCCAGGAAGGGCATGTCGGCCTGCTTGAGGCGGCCGCCCGTTTCGAGCCGGAGCGTGACGTGCGTTTCTCCACCTACGCGACATGGTGGATCCGCGCTTCGATCCAGGATTACATCCTGCGCAACTGGTCGATCGTCCGTGGTGGCACGAGTTCCGCGCAAAAGGCGCTCTTCTTCAACCTGCGCCGTCTGAGGGCCCGCCTCGCCCAGGGGTCGGACATGCTTTCCAGCGCCGAGGTGTACAGGGAGATCGCCACCGCGCTCGGCGTTCCCGTGGCGGATGTCGCCATGATGGATTCGCGCCTGTCCGGCCCCGACGCCTCGCTCAACGCGCCGCTTACCGACGAAGGCGGCAACGCTTCCGACCGGCAGGATTTCCTGGTCTCGGACGCGCCGCTTCCCGACGAGGTCGTCGGCGAGACCATCGACCTGGAGCGCCGTTCGGGCTGGCTCAACACCGCGCTCGGCGCGCTCAACGAGCGCGAGTTGAAGATTATCCGCGAGCGCCGTCTGCGCGAGGAAGGCGCGACGCTCGAGGCCCTCGGCCAACGCCTCGGAATCTCCAAGGAGCGCGTGCGCCAGATCGAGAACCGCGCCCTTGAAAAGCTCCGCACCGCGCTCGTCAGGGAAAACCCCGAAATCGCTTCGCTGTAA
PROTEIN sequence
Length: 287
MNEDSARRSMIQAAMRAPYLERGEEHDLAVRWKEKHDQEALHRITTAHMRLVISMAAKFRHFGLSMSDLIQEGHVGLLEAAARFEPERDVRFSTYATWWIRASIQDYILRNWSIVRGGTSSAQKALFFNLRRLRARLAQGSDMLSSAEVYREIATALGVPVADVAMMDSRLSGPDASLNAPLTDEGGNASDRQDFLVSDAPLPDEVVGETIDLERRSGWLNTALGALNERELKIIRERRLREEGATLEALGQRLGISKERVRQIENRALEKLRTALVRENPEIASL*