ggKbase home page

scnpilot_solids1_trim150_scaffold_30_29

Organism: SCNPILOT_SOLID_1_TRIM150_Rhizobiales_63_14

near complete RP 51 / 55 MC: 4 BSCG 51 / 51 MC: 3 ASCG 11 / 38
Location: 42135..43961

Top 3 Functional Annotations

Value Algorithm Source
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWX7_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 63.2
  • Coverage: 612.0
  • Bit_score: 792
  • Evalue 3.00e-226
  • rbh
Type VI secretion protein, VC_A0110 family {ECO:0000313|EMBL:EYR83995.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 63.2
  • Coverage: 612.0
  • Bit_score: 792
  • Evalue 4.20e-226
hypothetical protein; K11896 type VI secretion system protein ImpG similarity KEGG
DB: KEGG
  • Identity: 50.6
  • Coverage: 615.0
  • Bit_score: 601
  • Evalue 2.40e-169
  • rbh

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1827
ATGACCGACGATATCCTTGGCCACTACAATCGCGAATTGCTGAACATCCGCCGCGCGGCTGCCCAGTTCGCCGCCGAGAATCCGCGTATCGCCAGCCGGCTCAGGCTTTCCGAAGACGCGGTCGAAGACCCCCATGTCGGCCGTCTCATCGAATCCTTCGCCTTCCTGACCGCGCGCATCCGCCAAAGGCTCGACGACGATTTCACGGAACTGGCCAACGCCATGCTTGCGGTCCTGTATCCGCACTACACACGGCCGTTCCCGTCCATGGCCATCCTCCAGTTCGAGCCCGGCCCCGATATCGCCGAAGCGGCGGTCGTGCCGCGCGGCACCCTCGTCGATACCGAAGAGGTCGGTGGCGAAAGCTGCCGCTTCTCCACCGCTTTCGACGTGACGATGCATCCCGTCCGCGTCGTGAGCGCGGCGCTGTCGGGCCGTCCCATCCGGGCGCCCGAATTCGAAGCAGCGGCGGATGCGGCAGCCTGCCTGCGGCTGACGCTCGAAACTTCGCTGAAGGAAGGCGGCTTTTCCGATATCTCGCCGGCATCGCTGCGCCTGTTTCTGCGCGGACAGCCGCAACTCGTCTATCCGCTCTACGAGATGCTCCTGAACGATGTCGTGGCTGTTGCTTTCGCGGCGGGAGCGAACGACGCGGAACCGGTGATCATGGACAGCGTGGCTTTGACGCCGGCCGGTTTCGAAAGCAATGAAGGGCTGCTTCACTATCCTGACACGTCACACGCCGGCTACCGGCTGCTGACGGAATATTTCGCCTTTCCCGAAAAGTTCCTTTTTGTCGACCTGGCTTTTCCTGATCGTGCACGGCTCGGCAACAAGGGCCGCACACTCGACGTCTTCATCTATCTCAGGCGCTCGCGCGCCAATATCGAGCGCGCGGTTACCGCTTCTGCATTCGCGCTCAACTGCACGCCCGTCGCCAACCTCTTCCGGCAGGCGGCGGAGCCCATCTCCCTCGATCACGCCACGGCGCAGTACACGGTGGAGCCCGACAGCCGCCGTTCAGACGCTCTGGAAATCTACTCCATCGAGAAGGTGGTGGCCTCGGACGGCGACGGCAACGCGCGGGAAGTCCTGCCCGTCTACGGAACGCTCCATGCCCGCCGCAGCGACACCGCGCGCGGCGCGCCCGCCTGGTGGATCGCCCATCGCCGCCACGACACGGACACGGCCGGAAAGGAGCGCATGGCGCTCTCGATTTTCGATCCGGATTTCACGCCTTCCGCACCTGCCGATACGGTCCTGTCGGTCGATACGCTGTGCTTCAACGGAAATCTCGCCGAACGGCTGCCGTTTGGCGGCGGCCGGCCGGAGTTGCGGCTGGCGGAACCGATGGCCAGCGTGGAAGGTCTACGGCTGATAACCGCCCCCACTCCCGTAGCCCGGCCGGATTACGGAGAGGGGGCACGGTGGCGACTGATCTCGCATCTCGCTCTCAACCATCTGTCCATCGTCAGCGACGGCGGCCTGGACGTCCTCAAGGAAATGCTGCTCCTCTATGACATTCGCAGTTCCGACGAGACACGGTCGCTTGTCGACGGGATCGTCGCACTGTCCTCCCGGCCGGGGACGGCGCGCCTGCGTGTAAAAGGGAATACGGCGTTCTGCCGGGGCATCGACGTGACGGCAACCTTCGACGAGGCGTATTTCTCCGGCAACGGCATCTATATGGCCGCCAGCGTGCTGGAGCGTTTCTTCGGCATGTATGCCAGCGTCAATTCCTTCGCCCGCCTGAGCGCCAGGATCAAAGGGCAAACCGGAGTTCTGAAAACATGGCCCGCGCGCGGAGGCGACCGCATACTTCTTTGA
PROTEIN sequence
Length: 609
MTDDILGHYNRELLNIRRAAAQFAAENPRIASRLRLSEDAVEDPHVGRLIESFAFLTARIRQRLDDDFTELANAMLAVLYPHYTRPFPSMAILQFEPGPDIAEAAVVPRGTLVDTEEVGGESCRFSTAFDVTMHPVRVVSAALSGRPIRAPEFEAAADAAACLRLTLETSLKEGGFSDISPASLRLFLRGQPQLVYPLYEMLLNDVVAVAFAAGANDAEPVIMDSVALTPAGFESNEGLLHYPDTSHAGYRLLTEYFAFPEKFLFVDLAFPDRARLGNKGRTLDVFIYLRRSRANIERAVTASAFALNCTPVANLFRQAAEPISLDHATAQYTVEPDSRRSDALEIYSIEKVVASDGDGNAREVLPVYGTLHARRSDTARGAPAWWIAHRRHDTDTAGKERMALSIFDPDFTPSAPADTVLSVDTLCFNGNLAERLPFGGGRPELRLAEPMASVEGLRLITAPTPVARPDYGEGARWRLISHLALNHLSIVSDGGLDVLKEMLLLYDIRSSDETRSLVDGIVALSSRPGTARLRVKGNTAFCRGIDVTATFDEAYFSGNGIYMAASVLERFFGMYASVNSFARLSARIKGQTGVLKTWPARGGDRILL*