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scnpilot_solids1_trim150_scaffold_3609

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_3609_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..607)
DNA (606bp) protein (202aa)
Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKE0_9GAMM
Poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit {ECO:0000313|EMBL:EIL99931.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit
scnpilot_solids1_trim150_scaffold_3609_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(619..1632)
DNA (1014bp) protein (338aa)
Poly(R)-hydroxyalkanoic acid synthase subunit n=1 Tax=Rhodanobacter denitrificans RepID=I4WLT7_9GAMM rbh
Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) rbh
Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E) {ECO:0000313|EMBL:AGG88626.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_3609_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1754..3859)
DNA (2106bp) protein (702aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Polyribonucleotide nucleotidyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=I4WLT6_9GAMM rbh
polyribonucleotide nucleotidyltransferase rbh
scnpilot_solids1_trim150_scaffold_3609_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3957..4226)
DNA (270bp) protein (90aa)
30S ribosomal protein S15 n=2 Tax=Rhodanobacter RepID=I4WLT5_9GAMM
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343, ECO:0000256|RuleBase:RU003920}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ribosomal protein S15
scnpilot_solids1_trim150_scaffold_3609_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4393..5319)
DNA (927bp) protein (309aa)
tRNA pseudouridine synthase B (EC:4.2.1.70) rbh
tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01080}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01080};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA pseudouridylate synthase {ECO:0000256|HAMAP-Rule:MF_01080}; tRNA-uridine isomerase {ECO:0000256|HAMAP-Rule:MF_01080}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
tRNA pseudouridine synthase B n=1 Tax=Rhodanobacter denitrificans RepID=M4NG53_9GAMM rbh
scnpilot_solids1_trim150_scaffold_3609_6
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5348..5731)
DNA (384bp) protein (128aa)
Ribosome-binding factor A n=1 Tax=Rhodanobacter denitrificans RepID=I4WLT3_9GAMM
ribosome-binding factor A
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_3609_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5826..6203)
DNA (378bp) protein (126aa)
Translation initiation factor IF-2 n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKE6_9GAMM
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
bacterial translation initiation factor 2 (bIF-2)
scnpilot_solids1_trim150_scaffold_3609_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6173..8614)
DNA (2442bp) protein (814aa)
Translation initiation factor IF-2 n=1 Tax=Rhodanobacter denitrificans RepID=I4WLT2_9GAMM
bacterial translation initiation factor 2 (bIF-2)
Translation initiation factor IF-2 {ECO:0000256|HAMAP-Rule:MF_00100, ECO:0000256|RuleBase:RU000644}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_3609_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8679..10184)
DNA (1506bp) protein (502aa)
Transcription elongation factor NusA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WKE7_9GAMM rbh
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcription termination factor NusA rbh
scnpilot_solids1_trim150_scaffold_3609_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10287..10820)
DNA (534bp) protein (178aa)
Ribosome maturation factor RimP n=1 Tax=Rhodanobacter denitrificans RepID=I4WLT0_9GAMM rbh
hypothetical protein rbh
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_3609_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11133..12587)
DNA (1455bp) protein (485aa)
NADH dehydrogenase subunit N (EC:1.6.5.3) rbh
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
NADH-quinone oxidoreductase subunit N n=1 Tax=Rhodanobacter denitrificans RepID=I4WLS9_9GAMM rbh
scnpilot_solids1_trim150_scaffold_3609_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12600..13616)
DNA (1017bp) protein (339aa)
NADH dehydrogenase subunit M (EC:1.6.5.3)
NADH dehydrogenase subunit M {ECO:0000313|EMBL:AGG88617.1}; EC=1.6.5.3 {ECO:0000313|EMBL:AGG88617.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
NADH dehydrogenase subunit M n=1 Tax=Rhodanobacter denitrificans RepID=I4WLS8_9GAMM
Displaying 12 items

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