ggKbase home page

scnpilot_solids1_trim150_scaffold_1315

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1315_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..2207)
DNA (2205bp) protein (735aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WER2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97953.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Rhs family protein
scnpilot_solids1_trim150_scaffold_1315_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2372..3208)
DNA (837bp) protein (279aa)
Rhs family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2E9_9GAMM
Rhs family protein {ECO:0000313|EMBL:EIL93640.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Rhs family protein
scnpilot_solids1_trim150_scaffold_1315_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3418..6588)
DNA (3171bp) protein (1057aa)
Cation/multidrug efflux pump n=1 Tax=Rhodanobacter denitrificans RepID=M4ND09_9GAMM rbh
Cation/multidrug efflux pump {ECO:0000313|EMBL:AGG87323.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
cation/multidrug efflux pump rbh
scnpilot_solids1_trim150_scaffold_1315_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6818..9994)
DNA (3177bp) protein (1059aa)
Cation/multidrug efflux pump n=1 Tax=Rhodanobacter denitrificans RepID=M4NC24_9GAMM rbh
Cation/multidrug efflux pump {ECO:0000313|EMBL:AGG87322.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
cation/multidrug efflux pump rbh
scnpilot_solids1_trim150_scaffold_1315_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10155..12005)
DNA (1851bp) protein (617aa)
TonB-dependent vitamin B12 receptor n=1 Tax=Rhodanobacter denitrificans RepID=M4NHL6_9GAMM rbh
TonB-dependent vitamin B12 receptor {ECO:0000313|EMBL:AGG87321.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
TonB-dependent vitamin B12 receptor rbh
scnpilot_solids1_trim150_scaffold_1315_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12478..13614)
DNA (1137bp) protein (379aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEQ8_9GAMM rbh
N-acetylglucosamine-6-phosphate deacetylase
scnpilot_solids1_trim150_scaffold_1315_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13743..14774)
DNA (1032bp) protein (344aa)
Glucosamine-fructose-6-phosphate aminotransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEQ7_9GAMM rbh
Glucosamine-fructose-6-phosphate aminotransferase {ECO:0000313|EMBL:EIL97948.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative phosphosugar isomerase rbh
scnpilot_solids1_trim150_scaffold_1315_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14784..15539)
DNA (756bp) protein (252aa)
Transcriptional regulator n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEQ6_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EIL97947.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_1315_9
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15674..17137
DNA (1464bp) protein (488aa)
Glucose-6-phosphate 1-dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497}; Short=G6PD {ECO:0000256|HAMAP-Rule:MF_00966};; EC=1.1.1.49 {ECO:0000256|HAMAP-Rule:MF_00966, ECO:0000256|RuleBase:RU000497};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEQ5_9GAMM rbh
glucose-6-phosphate 1-dehydrogenase rbh
scnpilot_solids1_trim150_scaffold_1315_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17235..17948
DNA (714bp) protein (238aa)
6-phosphogluconolactonase n=1 Tax=Rhodanobacter denitrificans RepID=M4NHK6_9GAMM rbh
6-phosphogluconolactonase rbh
6-phosphogluconolactonase {ECO:0000313|EMBL:AGG87311.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_11
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18055..19881
DNA (1827bp) protein (609aa)
6-phosphogluconate dehydratase n=1 Tax=Rhodanobacter denitrificans RepID=M4NA70_9GAMM
6-phosphogluconate dehydratase {ECO:0000313|EMBL:AGG87310.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
6-phosphogluconate dehydratase
scnpilot_solids1_trim150_scaffold_1315_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20026..20691
DNA (666bp) protein (222aa)
2-keto-3-deoxy-phosphogluconate aldolase (EC:4.1.2.14) rbh
2-keto-3-deoxy-phosphogluconate aldolase {ECO:0000313|EMBL:AGG87309.1}; EC=4.1.2.14 {ECO:0000313|EMBL:AGG87309.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUV3_9GAMM rbh
scnpilot_solids1_trim150_scaffold_1315_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20759..21580
DNA (822bp) protein (274aa)
Thiol-disulfide isomerase-like thioredoxin n=1 Tax=Rhodanobacter denitrificans RepID=M4NCZ5_9GAMM rbh
thiol-disulfide isomerase-like thioredoxin rbh
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:AGG87308.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21674..22378)
DNA (705bp) protein (235aa)
RNA polymerase sigma factor n=1 Tax=Rhodanobacter denitrificans RepID=M4NC10_9GAMM rbh
RNA polymerase sigma factor, sigma-70 family rbh
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22434..23057)
DNA (624bp) protein (208aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021192}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223, ECO:0000256|SAAS:SAAS00021179};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
GTP cyclohydrolase 1 n=1 Tax=Rhodanobacter denitrificans RepID=I4WUV0_9GAMM rbh
GTP cyclohydrolase I rbh
scnpilot_solids1_trim150_scaffold_1315_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23222..23752
DNA (531bp) protein (177aa)
Putative outer membrane protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NA66_9GAMM rbh
putative outer membrane protein rbh
Putative outer membrane protein {ECO:0000313|EMBL:AGG87305.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23763..24107
DNA (345bp) protein (115aa)
Plastocyanin n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU8_9GAMM
plastocyanin
Plastocyanin {ECO:0000313|EMBL:AGG87304.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24231..24572)
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU7_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG87303.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24699..27140)
DNA (2442bp) protein (814aa)
Dipeptidyl aminopeptidase/acylaminoacyl peptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU6_9GAMM rbh
Dipeptidyl aminopeptidase/acylaminoacyl peptidase {ECO:0000313|EMBL:AGG87302.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
dipeptidyl aminopeptidase/acylaminoacyl peptidase rbh
scnpilot_solids1_trim150_scaffold_1315_20
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27288..29450
DNA (2163bp) protein (721aa)
prolyl oligopeptidase (EC:3.4.21.26) rbh
Prolyl endopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU5_9GAMM rbh
Prolyl endopeptidase {ECO:0000313|EMBL:EIL97936.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_1315_21
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29504..29977)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97935.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1315_22
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30194..30856
DNA (663bp) protein (221aa)
Putative esterase n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU3_9GAMM rbh
putative esterase rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1315_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30887..31939
DNA (1053bp) protein (351aa)
Sensory transduction protein kinase AlgZ n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEP2_9GAMM rbh
Histidine kinase rbh
Sensory transduction protein kinase AlgZ {ECO:0000313|EMBL:EIL97933.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_1315_24
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31939..32751
DNA (813bp) protein (271aa)
Putative two-component system response regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WUU1_9GAMM
response regulator of the LytR/AlgR family
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:AGG87295.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1315_25
Arenimonas metalli, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32840..33820
DNA (981bp) protein (327aa)
Putative uncharacterized protein n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J482_COMT2 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN46430.1}; TaxID=1384056 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas metalli CF5-1.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_1315_26
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33941..34153
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEN8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97929.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Protein of unknown function (DUF2945)
scnpilot_solids1_trim150_scaffold_1315_27
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34155..34700
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEN7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL97928.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_1315_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34795..35433
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WPI0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01372.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
Displaying 28 items

View Taxonomy