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scnpilot_solids1_trim150_scaffold_1563

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1563_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..146)
DNA (144bp) protein (48aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCU5_9GAMM
putative ATPase of the PP-loop superfamily implicated in cell cycle control
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1563_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

264..470
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCU4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97285.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
uncharacterized conserved small protein containing a coiled-coil domain
scnpilot_solids1_trim150_scaffold_1563_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

490..1092
DNA (603bp) protein (201aa)
Acetyltransferase, ribosomal protein N-acetylase n=1 Tax=Rhodanobacter denitrificans RepID=I4WJY4_9GAMM rbh
acetyltransferase, ribosomal protein N-acetylase rbh
Acetyltransferase, ribosomal protein N-acetylase {ECO:0000313|EMBL:AGG90647.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1201..2592)
DNA (1392bp) protein (464aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000256|PIRNR:PIRNR000850}; EC=2.7.8.8 {ECO:0000256|PIRNR:PIRNR000850};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Phosphatidylserine synthase n=1 Tax=Rhodanobacter denitrificans RepID=I4WJY3_9GAMM rbh
phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase rbh
scnpilot_solids1_trim150_scaffold_1563_5
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2697..3095)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NIC3_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90649.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_6
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3238..6120)
DNA (2883bp) protein (961aa)
Zinc protease n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF32_9GAMM rbh
Zinc protease {ECO:0000313|EMBL:EIL98073.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative Zn-dependent peptidase rbh
scnpilot_solids1_trim150_scaffold_1563_7
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6385..6588
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NT33_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90651.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6630..7103
DNA (474bp) protein (158aa)
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF34_9GAMM
putative rRNA methylase SpoU family
scnpilot_solids1_trim150_scaffold_1563_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7248..7898
DNA (651bp) protein (217aa)
Sterol-binding domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WJX8_9GAMM rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AGG90653.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7895..9022
DNA (1128bp) protein (376aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-octaprenylphenol hydroxylase (EC:1.14.13.-)
Putative ubiquinone biosynthesis protein UbiB n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WF36_9GAMM
scnpilot_solids1_trim150_scaffold_1563_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8962..9519
DNA (558bp) protein (186aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
2-octaprenylphenol hydroxylase (EC:1.14.13.-)
Putative ubiquinone biosynthesis protein UbiB n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VR82_9GAMM
scnpilot_solids1_trim150_scaffold_1563_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9652..10359
DNA (708bp) protein (236aa)
23S RNA-specific pseudouridylate synthase (EC:5.4.99.-) rbh
Pseudouridine synthase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W783_9GAMM
23S RNA-specific pseudouridylate synthase {ECO:0000313|EMBL:EIL95324.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_1563_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10486..10908
DNA (423bp) protein (141aa)
Protein chain release factor B n=1 Tax=Rhodanobacter denitrificans RepID=I4WJX5_9GAMM
protein chain release factor B
Protein chain release factor B {ECO:0000313|EMBL:AGG90656.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10905..11501
DNA (597bp) protein (199aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NKP4_9GAMM rbh
1-acyl-sn-glycerol-3-phosphate acyltransferase rbh
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:AGG90657.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11838..12854
DNA (1017bp) protein (339aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Rhodanobacter denitrificans RepID=I4WJX3_9GAMM rbh
nucleoside-diphosphate-sugar epimerase rbh
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:AGG90658.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12820..14211
DNA (1392bp) protein (464aa)
Glycosyl transferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NID3_9GAMM rbh
glycosyl transferase rbh
Glycosyl transferase {ECO:0000313|EMBL:AGG90659.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14199..15614
DNA (1416bp) protein (472aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NI84_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90660.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_18
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15637..16410
DNA (774bp) protein (258aa)
Acyltransferase 3 n=1 Tax=Thauera phenylacetica B4P RepID=N6YXE2_9RHOO
acyltransferase 3
Tax=BJP_IG2103_Dechloromonas_63_51
scnpilot_solids1_trim150_scaffold_1563_19
unknown

Not on your lists

comp(16723..17562)
DNA (840bp) protein (280aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1563_20
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17621..18661)
DNA (1041bp) protein (347aa)
Transcriptional regulator n=1 Tax=Rhodanobacter denitrificans RepID=I4WJW9_9GAMM rbh
transcriptional regulator rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1563_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18784..20394
DNA (1611bp) protein (537aa)
malate synthase (EC:2.3.3.9) rbh
Malate synthase {ECO:0000313|EMBL:AGG90663.1}; EC=2.3.3.9 {ECO:0000313|EMBL:AGG90663.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Malate synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NLW9_9GAMM rbh
scnpilot_solids1_trim150_scaffold_1563_22
unknown

Not on your lists

comp(20865..21110)
DNA (246bp) protein (82aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1563_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21150..21794
DNA (645bp) protein (215aa)
isocitrate lyase (EC:4.1.3.1)
Isocitrate lyase n=1 Tax=Rhodanobacter denitrificans RepID=I4WJW7_9GAMM
Isocitrate lyase {ECO:0000313|EMBL:EIL98084.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_1563_24
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21885..23681)
DNA (1797bp) protein (599aa)
NhaP-type Na+(K+)/H+ antiporter n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEY8_9GAMM rbh
NhaP-type Na+(K+)/H+ antiporter {ECO:0000313|EMBL:EIL98029.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
NhaP-type Na+(K+)/H+ antiporter
scnpilot_solids1_trim150_scaffold_1563_25
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23810..25303)
DNA (1494bp) protein (498aa)
Mg chelatase subunit ChlI n=1 Tax=Rhodanobacter denitrificans RepID=I4WJW5_9GAMM rbh
Mg chelatase-related protein rbh
Mg chelatase-related protein {ECO:0000313|EMBL:AGG90666.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_26
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25452..25712)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WEZ0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90667.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25893..26231
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II 2 n=1 Tax=Rhodanobacter denitrificans RepID=I4WJW3_9GAMM
nitrogen regulatory protein PII
Nitrogen regulatory protein PII {ECO:0000313|EMBL:AGG90668.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1563_28
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26690..28702
DNA (2013bp) protein (671aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Ribonucleoside-diphosphate reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W793_9GAMM
ribonucleoside-diphosphate reductase, alpha subunit
scnpilot_solids1_trim150_scaffold_1563_29
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28650..29078
DNA (429bp) protein (143aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Ribonucleoside-diphosphate reductase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIE3_9GAMM
ribonucleoside-diphosphate reductase, alpha subunit
scnpilot_solids1_trim150_scaffold_1563_30
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29175..30200
DNA (1026bp) protein (342aa)
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Rhodanobacter denitrificans RepID=I4WJW0_9GAMM rbh
ribonucleotide reductase, beta subunit rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
Displaying items 1-30 of 33 in total

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