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scnpilot_solids1_trim150_scaffold_479

Search features with annotation key words

Displaying items 1-30 of 53 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_479_1
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

87..1808
DNA (1722bp) protein (574aa)
Uncharacterized protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8ENP1_RUNSL rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI50617.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_solids1_trim150_scaffold_479_2
unknown

Not on your lists

2594..2731
DNA (138bp) protein (46aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_479_3
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3892..4242
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W5E7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EFK33169.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_479_4
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(4298..5056)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Cytophaga aurantiaca RepID=UPI00036FB94B
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_479_5
Croceibacter atlanticus, Croceibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

5305..5493
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090) RepID=A3UA44_CROAH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAP86680.1}; TaxID=216432 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Croceibacter.;" source="Croceibacter atlanticus (strain ATCC BAA-628 / HTCC2559 / KCTC 12090).;"
scnpilot_solids1_trim150_scaffold_479_trna_1
unknown

Not on your lists

comp(5663..5736)
DNA (74bp)
transferRNA Met
scnpilot_solids1_trim150_scaffold_479_6
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5986..6747
DNA (762bp) protein (254aa)
sulfate-transporting ATPase; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
Sulfate-transporting ATPase n=1 Tax=Niabella soli DSM 19437 RepID=H1NT07_9SPHI
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHF16093.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_solids1_trim150_scaffold_479_7
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

6837..8342
DNA (1506bp) protein (502aa)
auxin-regulated protein n=1 Tax=Segetibacter koreensis RepID=UPI000371F55C
GH3 auxin-responsive promoter
GH3 auxin-responsive promoter {ECO:0000313|EMBL:AEW02307.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_479_8
Pedobacter sp. BAL39, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

8432..8902
DNA (471bp) protein (157aa)
Methionine sulfoxide reductase B {ECO:0000313|EMBL:EDM35029.1}; EC=1.8.4.11 {ECO:0000313|EMBL:EDM35029.1};; TaxID=391596 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. BAL39.;"
methionine sulfoxide reductase B; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12]
Methionine sulfoxide reductase B n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHK3_9SPHI
scnpilot_solids1_trim150_scaffold_479_9
unknown

Not on your lists

8908..9630
DNA (723bp) protein (241aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_479_10
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9659..9988)
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036C88BE
Heme biosynthesis protein HemY {ECO:0000313|EMBL:KIC95255.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
iron-sulfur cluster assembly accessory protein; K13628 iron-sulfur cluster assembly protein
scnpilot_solids1_trim150_scaffold_479_11
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(10097..11263)
DNA (1167bp) protein (389aa)
cysteine desulfurase IscS; K04487 cysteine desulfurase [EC:2.8.1.7]
cysteine desulfurase n=1 Tax=Segetibacter koreensis RepID=UPI000369833A
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_479_12
GWC2_Ignavibacteria_rel_36_12_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(11306..11920)
DNA (615bp) protein (205aa)
Restriction endonuclease BglII id=2135217 bin=GWD2_Bacteroidetes_33_33 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152 rbh
restriction endonuclease BglII rbh
Tax=GWC2_Ignavibacteria_rel_36_12_curated
scnpilot_solids1_trim150_scaffold_479_13
GWD2_Bacteroidetes_33_33_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11920..12885)
DNA (966bp) protein (322aa)
DNA (Cytosine-5-)-methyltransferase id=2135277 bin=GWD2_Bacteroidetes_33_33 species=Tannerella forsythia genus=Tannerella taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidetes_33_33 organism_group=Bacteroidetes organism_desc=a152
DNA (cytosine-5-)-methyltransferase rbh
Tax=GWD2_Bacteroidetes_33_33_curated
scnpilot_solids1_trim150_scaffold_479_14
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

13128..14450
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003802816
Serine protease {ECO:0000313|EMBL:KIC95574.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
Nodulation efficiency protein NfeD; K07403 membrane-bound serine protease (ClpP class)
scnpilot_solids1_trim150_scaffold_479_15
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14500..15318
DNA (819bp) protein (273aa)
membrane protein n=1 Tax=Segetibacter koreensis RepID=UPI00037BB1FA
hypothetical protein
SPFH domain, Band 7 family protein {ECO:0000313|EMBL:AEW02553.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_479_16
Pedobacter sp. V48, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15354..17105)
DNA (1752bp) protein (584aa)
hypothetical protein n=1 Tax=Hymenobacter aerophilus RepID=UPI00035E1F23 rbh
Uncharacterized protein {ECO:0000313|EMBL:ETZ19573.1}; TaxID=509635 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. V48.;"
amino acid permease rbh
scnpilot_solids1_trim150_scaffold_479_17
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17274..18044)
DNA (771bp) protein (257aa)
TatD family hydrolase; K03424 TatD DNase family protein [EC:3.1.21.-] rbh
Hydrolase, TatD family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJV4_NIAKG rbh
Hydrolase, TatD family {ECO:0000313|EMBL:AEW01852.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_479_18
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18150..19049
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Saprospira grandis DSM 2844 RepID=J0P7G0_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KIC95268.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
lipoprotein
scnpilot_solids1_trim150_scaffold_479_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19166..19801)
DNA (636bp) protein (212aa)
Polysaccharide deacetylase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJV6_NIAKG
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:AEW01854.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_479_20
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19877..20650)
DNA (774bp) protein (258aa)
exodeoxyribonuclease III Xth; K01142 exodeoxyribonuclease III [EC:3.1.11.2] rbh
Exodeoxyribonuclease III Xth n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PT55_CHIPD rbh
Exodeoxyribonuclease III Xth {ECO:0000313|EMBL:ACU60845.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_479_21
Cyclobacteriaceae bacterium AK24, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(20843..23785)
DNA (2943bp) protein (981aa)
Uncharacterized protein n=1 Tax=Cyclobacteriaceae bacterium AK24 RepID=R7ZV31_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:EON77854.1}; TaxID=1288963 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; unclassified Cyclobacteriaceae.;" source="Cyclobacteriaceae bacterium AK24.;"
membrane-bound dehydrogenase domain-containing protein rbh
scnpilot_solids1_trim150_scaffold_479_22
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24071..25546)
DNA (1476bp) protein (492aa)
membrane protein n=1 Tax=Salisaeta longa RepID=UPI0003B3FF5C rbh
Uncharacterized protein {ECO:0000313|EMBL:EOR93235.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
outer membrane protein rbh
scnpilot_solids1_trim150_scaffold_479_23
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25589..28858)
DNA (3270bp) protein (1090aa)
TonB-denpendent receptor n=1 Tax=Flavobacteriaceae bacterium S85 RepID=UPI0002559D85 rbh
TonB-dependent receptor rbh
TonB-dependent receptor {ECO:0000313|EMBL:ACU62253.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_479_24
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29200..30432)
DNA (1233bp) protein (411aa)
Anti-FecI sigma factor, FecR n=1 Tax=Niabella soli DSM 19437 RepID=H1NM03_9SPHI rbh
Uncharacterized protein {ECO:0000313|EMBL:AHF17215.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
anti-FecI sigma factor FecR
scnpilot_solids1_trim150_scaffold_479_25
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30492..31088)
DNA (597bp) protein (199aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TC40_NIAKG
ECF subfamily RNA polymerase sigma-24 subunit
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEW00347.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_479_26
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(31631..32707)
DNA (1077bp) protein (359aa)
Oxidoreductase domain protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XUQ5_PEDHD
oxidoreductase domain-containing protein
Oxidoreductase domain protein {ECO:0000313|EMBL:ACU03905.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_solids1_trim150_scaffold_479_27
unknown

Not on your lists

33188..33313
DNA (126bp) protein (42aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_479_28
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(33704..36784)
DNA (3081bp) protein (1027aa)
Membrane-bound dehydrogenase domain protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J0K9_CYCMS
Membrane-bound dehydrogenase domain protein {ECO:0000313|EMBL:AEL23925.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
membrane-bound dehydrogenase domain-containing protein
scnpilot_solids1_trim150_scaffold_479_29
RLO_PLX_64_10, Bacteria

Not on your lists

comp(36891..38420)
DNA (1530bp) protein (510aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DF55_SINAD rbh
hypothetical protein rbh
Tax=RIFCSPLOWO2_12_FULL_PLX_64_10_curated
Displaying items 1-30 of 53 in total

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