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scnpilot_solids1_trim150_scaffold_2025

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2025_1
Acidothermus cellulolyticus, Acidothermus, Acidothermales, Actinobacteria, Actinobacteria, Bacteria

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2..1198
DNA (1197bp) protein (399aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B720DE
acyltransferase 3
Peptidoglycan-N-acetylmuramate O-acetyltransferase {ECO:0000313|EMBL:ABK53229.1}; TaxID=351607 species="Bacteria; Actinobacteria; Acidothermales; Acidothermaceae; Acidothermus.;" source="Acidothermus cellulolyticus (strain ATCC 43068 / 11B).;"
scnpilot_solids1_trim150_scaffold_2025_2
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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1161..1385
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Nocardia farcinica (strain IFM 10152) RepID=Q5Z1S6_NOCFA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD55615.1}; TaxID=247156 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
scnpilot_solids1_trim150_scaffold_2025_3
Nocardia farcinica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1382..1702
DNA (321bp) protein (107aa)
Transcriptional modulator of MazE/toxin, MazF n=1 Tax=Saccharomonospora paurometabolica YIM 90007 RepID=G4IXR2_9PSEU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAD55614.1}; TaxID=247156 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia farcinica (strain IFM 10152).;"
scnpilot_solids1_trim150_scaffold_2025_4
Streptomyces himastatinicus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

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comp(1567..2130)
DNA (564bp) protein (188aa)
Putative uncharacterized protein n=1 Tax=Streptomyces himastatinicus ATCC 53653 RepID=D9WV55_9ACTO
Putative uncharacterized protein {ECO:0000313|EMBL:EFL28555.1}; TaxID=457427 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces himastatinicus ATCC 53653.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2025_trna_1
unknown

Not on your lists

comp(2156..2228)
DNA (73bp)
transferRNA Thr
scnpilot_solids1_trim150_scaffold_2025_5
unknown

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2234..2440
DNA (207bp) protein (69aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2025_6
Nitrolancea hollandica, Nitrolancea, Sphaerobacterales, Sphaerobacteridae, Chloroflexi, Bacteria

Not on your lists

2588..2869
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Frankia sp. Iso899 RepID=UPI0003B34464
Uncharacterized protein {ECO:0000313|EMBL:CCF83446.1}; TaxID=1129897 species="Bacteria; Chloroflexi; Sphaerobacteridae; Sphaerobacterales; Sphaerobacterineae; Sphaerobacteraceae; Nitrolancea.;" source="Nitrolancea hollandica Lb.;"
scnpilot_solids1_trim150_scaffold_2025_7
Gordonia soli, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(3695..5581)
DNA (1887bp) protein (629aa)
cysJ; NADPH--sulfite reductase flavoprotein alpha-component (EC:1.8.1.2); K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2]
CysJ n=1 Tax=Curtobacterium sp. B18 RepID=UPI00034AF5A5
NADPH--sulfite reductase flavoprotein alpha-component {ECO:0000313|EMBL:GAC70698.1}; TaxID=1223545 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia soli NBRC 108243.;"
scnpilot_solids1_trim150_scaffold_2025_8
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5618..7114)
DNA (1497bp) protein (499aa)
hypothetical protein n=1 Tax=Dasania marina RepID=UPI0003787379
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
scnpilot_solids1_trim150_scaffold_2025_9
Sanguibacter keddieii, Sanguibacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7189..8886)
DNA (1698bp) protein (566aa)
Methyl-accepting chemotaxis protein n=1 Tax=Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 / ST-74) RepID=D1BG32_SANKS rbh
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein rbh
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:ACZ23549.1}; TaxID=446469 species="Bacteria; Actinobacteria; Micrococcales; Sanguibacteraceae; Sanguibacter.;" source="Sanguibacter keddieii (strain ATCC 51767 / DSM 10542 / NCFB 3025 /; ST-74).;"
scnpilot_solids1_trim150_scaffold_2025_10
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

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comp(8876..10249)
DNA (1374bp) protein (458aa)
Diguanylate phosphodiesterase n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EVM3_MODMB rbh
diguanylate phosphodiesterase rbh
Diguanylate phosphodiesterase {ECO:0000313|EMBL:CCH87436.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
scnpilot_solids1_trim150_scaffold_2025_11
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10358..11242
DNA (885bp) protein (295aa)
Transcriptional regulator, LysR-family n=1 Tax=Modestobacter marinus (strain BC501) RepID=I4EVM4_MODMB
LysR family transcriptional regulator
Transcriptional regulator, LysR-family {ECO:0000313|EMBL:CCH87437.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
scnpilot_solids1_trim150_scaffold_2025_12
Nakamurella multipartita, Nakamurella, Nakamurellales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11237..11767)
DNA (531bp) protein (177aa)
Transcriptional regulator, XRE family n=1 Tax=Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) RepID=C8X9Y4_NAKMY
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACV81184.1}; TaxID=479431 species="Bacteria; Actinobacteria; Nakamurellales; Nakamurellaceae; Nakamurella.;" source="Nakamurella multipartita (strain ATCC 700099 / DSM 44233 / JCM 9543 /; Y-104) (Microsphaera multipartita).;"
scnpilot_solids1_trim150_scaffold_2025_13
unknown

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comp(12262..12723)
DNA (462bp) protein (154aa)

This feature has no annotations

Displaying 14 items

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