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scnpilot_solids1_trim150_scaffold_118

Search features with annotation key words

Displaying items 1-30 of 91 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_118_1
unknown

Not on your lists

comp(1..423)
DNA (423bp) protein (141aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_118_trna_11
unknown

Not on your lists

comp(757..838)
DNA (82bp)
transferRNA Leu
scnpilot_solids1_trim150_scaffold_118_trna_10
unknown

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comp(874..957)
DNA (84bp)
transferRNA Leu
scnpilot_solids1_trim150_scaffold_118_2
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1014..1505)
DNA (492bp) protein (164aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000365C4EC
Uncharacterized protein {ECO:0000313|EMBL:KIC94886.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hscB; co-chaperone Hsc20; K04082 molecular chaperone HscB
scnpilot_solids1_trim150_scaffold_118_3
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

1566..2774
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003625391
alanine dehydrogenase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_118_4
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2767..4035)
DNA (1269bp) protein (423aa)
MiaB-like tRNA modifying enzyme n=1 Tax=Niabella soli DSM 19437 RepID=H1NJ88_9SPHI
2-methylthioadenine synthetase {ECO:0000313|EMBL:AHF14141.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
MiaB-like tRNA modifying protein
scnpilot_solids1_trim150_scaffold_118_5
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4226..5656
DNA (1431bp) protein (477aa)
GH3 auxin-responsive promoter n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T919_NIAKG
GH3 auxin-responsive promoter
GH3 auxin-responsive promoter {ECO:0000313|EMBL:AEV96972.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_118_6
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5689..6159
DNA (471bp) protein (157aa)
RNase HI; K03469 ribonuclease HI [EC:3.1.26.4]
Ribonuclease H {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437}; Short=RNase H {ECO:0000256|HAMAP-Rule:MF_00042};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00042, ECO:0000256|SAAS:SAAS00016437};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
RNaseH ribonuclease n=1 Tax=Niabella aurantiaca RepID=UPI00036E0080
scnpilot_solids1_trim150_scaffold_118_7
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6160..6816)
DNA (657bp) protein (219aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAZ6_NIAKG
LuxR family transcriptional regulator {ECO:0000313|EMBL:KIC91984.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
two component transcriptional regulator, LuxR family
scnpilot_solids1_trim150_scaffold_118_8
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6859..7695)
DNA (837bp) protein (279aa)
Putative signal transduction histidine kinase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAZ5_NIAKG
Histidine kinase {ECO:0000313|EMBL:KIC89384.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
putative signal transduction histidine kinase
scnpilot_solids1_trim150_scaffold_118_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(7692..8087)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAZ4_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01341.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_118_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

9001..9666
DNA (666bp) protein (222aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TAZ2_NIAKG
two component transcriptional regulator, LuxR family
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEW01339.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_118_11
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9668..10261)
DNA (594bp) protein (198aa)
riboflavin synthase subunit alpha; K00793 riboflavin synthase [EC:2.5.1.9]
Riboflavin synthase, alpha subunit n=1 Tax=Niabella soli DSM 19437 RepID=H1NKV3_9SPHI
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:AHF14398.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_solids1_trim150_scaffold_118_12
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

10368..10565
DNA (198bp) protein (66aa)
30S ribosomal protein S21 n=1 Tax=Niabella aurantiaca RepID=UPI000368EE6D
30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_118_13
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

10632..11537
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000364BF1F
Tyrosine recombinase xerC; K03733 integrase/recombinase XerC
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_118_14
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11696..11995
DNA (300bp) protein (100aa)
Sigma-54 modulation protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7E8_NIAKG
Putative sigma-54 modulation protein {ECO:0000313|EMBL:GAO41189.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
sigma-54 modulation protein; K05808 putative sigma-54 modulation protein
scnpilot_solids1_trim150_scaffold_118_trna_1
unknown

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12275..12347
DNA (73bp)
transferRNA Thr
scnpilot_solids1_trim150_scaffold_118_trna_2
unknown

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12394..12476
DNA (83bp)
transferRNA Tyr
scnpilot_solids1_trim150_scaffold_118_trna_3
unknown

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12576..12648
DNA (73bp)
transferRNA Gly
scnpilot_solids1_trim150_scaffold_118_trna_4
unknown

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12695..12766
DNA (72bp)
transferRNA Thr
scnpilot_solids1_trim150_scaffold_118_15
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

12970..14157
DNA (1188bp) protein (396aa)
elongation factor Tu n=1 Tax=Segetibacter koreensis RepID=UPI000378845C
translation elongation factor Tu; K02358 elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_118_trna_5
unknown

Not on your lists

14257..14327
DNA (71bp)
transferRNA Trp
scnpilot_solids1_trim150_scaffold_118_16
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14383..14574
DNA (192bp) protein (64aa)
Protein translocase subunit SecE n=1 Tax=Niabella soli DSM 19437 RepID=H1NSJ1_9SPHI
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
Preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
scnpilot_solids1_trim150_scaffold_118_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

14576..15187
DNA (612bp) protein (204aa)
transcription antitermination protein NusG n=1 Tax=Segetibacter koreensis RepID=UPI00037098FC rbh
transcription antitermination protein nusG; K02601 transcriptional antiterminator NusG
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_118_18
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15312..15743
DNA (432bp) protein (144aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
3-dehydroquinate dehydratase; K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00035E30F2
scnpilot_solids1_trim150_scaffold_118_19
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15879..17198)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THW7_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV98562.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_118_20
Hymenobacter sp. DG25B, Hymenobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(17252..17848)
DNA (597bp) protein (199aa)
GNAT family acetyltransferase (EC:2.3.1.-)
Acetyltransferase, GNAT family n=1 Tax=Bacillus megaterium (strain ATCC 12872 / QMB1551) RepID=D5DZF4_BACMQ
GCN5 family acetyltransferase {ECO:0000313|EMBL:AIZ64939.1}; TaxID=1385664 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Hymenobacter.;" source="Hymenobacter sp. DG25B.;"
scnpilot_solids1_trim150_scaffold_118_21
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(17841..18293)
DNA (453bp) protein (151aa)
NUDIX hydrolase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFY9_NIAKG
NUDIX hydrolase {ECO:0000313|EMBL:KIC91632.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
NUDIX hydrolase
scnpilot_solids1_trim150_scaffold_118_22
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18296..19234)
DNA (939bp) protein (313aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036047D7
Putative MIT family transporter {ECO:0000313|EMBL:GAO43672.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
Mg2 transporter protein CorA family protein; K03284 magnesium transporter
scnpilot_solids1_trim150_scaffold_118_23
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19268..20056)
DNA (789bp) protein (263aa)
diaminopimelate epimerase; K01778 diaminopimelate epimerase [EC:5.1.1.7]
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Diaminopimelate epimerase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TFY7_NIAKG
Displaying items 1-30 of 91 in total

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