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SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11

In projects: SCNPILOT_SOLID_1_TRIM150

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK

Properties

Avg. coverage: 11.36 Longest contig: 223.48 Kbp Bin length: 5.14 Mbp GC content: 42.47 %
Contigs count: 122 Features count: 4418 rRNAs count: 0 tRNAs count: 40

Genome completeness

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Displaying items 1-50 of 122 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids1_trim150_scaffold_1229
Order: Sphingobacteriales (81.82%)
11 14765 bp 41.89 9.65 89.60
scnpilot_solids1_trim150_scaffold_1595
Genus: Flavihumibacter (50%)
14 12187 bp 40.81 9.75 87.68
scnpilot_solids1_trim150_scaffold_34288
Species: Sphingobacterium sp. PM2-P1-29 (100%)
1 1195 bp 36.32 9.79 34.90
scnpilot_solids1_trim150_scaffold_1002
Order: Sphingobacteriales (54.55%)
22 25128 bp 43.81 9.80 94.85
scnpilot_solids1_trim150_scaffold_14677
Species: Solitalea canadensis (50%)
2 2196 bp 40.44 9.84 67.90
scnpilot_solids1_trim150_scaffold_395
Order: Sphingobacteriales (59.52%)
42 44027 bp 42.27 9.85 83.66
scnpilot_solids1_trim150_scaffold_3086
Phylum: Bacteroidetes (50%)
6 7035 bp 39.91 9.87 88.70
scnpilot_solids1_trim150_scaffold_11343
Order: Sphingobacteriales (50%)
4 2635 bp 38.52 9.91 94.27
scnpilot_solids1_trim150_scaffold_6343
Species: Flavihumibacter sp. ZG627 (50%)
2 4034 bp 41.75 10.00 98.98
scnpilot_solids1_trim150_scaffold_14606
Species: Sphingobacterium spiritivorum (100%)
1 2203 bp 45.76 10.01 99.95
scnpilot_solids1_trim150_scaffold_872
Order: Sphingobacteriales (82.35%)
17 19701 bp 43.06 10.08 92.04
scnpilot_solids1_trim150_scaffold_547
Order: Sphingobacteriales (75%)
24 29104 bp 42.31 10.13 93.02
scnpilot_solids1_trim150_scaffold_4102
Genus: Chryseobacterium (57.14%)
7 5611 bp 45.20 10.16 98.43
scnpilot_solids1_trim150_scaffold_440
Order: Sphingobacteriales (69.57%)
23 35946 bp 41.88 10.20 90.46
scnpilot_solids1_trim150_scaffold_764
Order: Sphingobacteriales (50%)
18 22219 bp 40.88 10.28 92.46
scnpilot_solids1_trim150_scaffold_15228
Species: Pseudopedobacter saltans (80%)
5 2135 bp 36.02 10.33 88.24
scnpilot_solids1_trim150_scaffold_6656
Species: Solitalea canadensis (100%)
1 3894 bp 40.34 10.36 95.61
scnpilot_solids1_trim150_scaffold_531
Order: Sphingobacteriales (51.85%)
28 30059 bp 43.62 10.42 85.02
scnpilot_solids1_trim150_scaffold_3659
Species: Niastella koreensis (75%)
9 6136 bp 41.93 10.44 64.96
scnpilot_solids1_trim150_scaffold_3637
Species: Flavihumibacter solisilvae (50%)
6 6160 bp 45.05 10.45 97.94
scnpilot_solids1_trim150_scaffold_33363
Species: Niastella koreensis (100%)
1 1219 bp 44.22 10.46 51.44
scnpilot_solids1_trim150_scaffold_10707
Genus: Sphingobacterium (60%)
5 2746 bp 40.93 10.49 90.35
scnpilot_solids1_trim150_scaffold_189
Order: Sphingobacteriales (77.59%)
60 62931 bp 41.06 10.49 85.69
scnpilot_solids1_trim150_scaffold_89
Order: Sphingobacteriales (65.66%)
101 105192 bp 42.22 10.52 87.07
scnpilot_solids1_trim150_scaffold_13915
Species: Niastella koreensis (100%)
1 2279 bp 44.32 10.53 53.31
scnpilot_solids1_trim150_scaffold_206
Order: Sphingobacteriales (60.42%)
48 59709 bp 41.69 10.56 89.01
scnpilot_solids1_trim150_scaffold_554
Order: Sphingobacteriales (66.67%)
24 28805 bp 42.55 10.56 88.13
scnpilot_solids1_trim150_scaffold_563
Order: Sphingobacteriales (84%)
25 28309 bp 42.46 10.57 89.45
scnpilot_solids1_trim150_scaffold_224
Phylum: Bacteroidetes (83.33%)
54 59946 bp 43.21 10.62 90.79
scnpilot_solids1_trim150_scaffold_219
Order: Sphingobacteriales (61.29%)
62 64566 bp 43.08 10.67 89.20
scnpilot_solids1_trim150_scaffold_355
Order: Sphingobacteriales (57.89%)
39 42436 bp 39.98 10.72 85.19
scnpilot_solids1_trim150_scaffold_588
Phylum: Bacteroidetes (71.88%)
33 27397 bp 39.96 10.76 89.15
scnpilot_solids1_trim150_scaffold_919
Order: Sphingobacteriales (83.33%)
18 18909 bp 44.20 10.80 76.71
scnpilot_solids1_trim150_scaffold_218
Order: Sphingobacteriales (52.27%)
44 58509 bp 42.29 10.81 90.50
scnpilot_solids1_trim150_scaffold_1312
Order: Sphingobacteriales (60%)
15 14113 bp 41.17 10.86 81.99
scnpilot_solids1_trim150_scaffold_401
Order: Sphingobacteriales (76.47%)
51 54804 bp 41.72 10.86 89.81
scnpilot_solids1_trim150_scaffold_138
Order: Sphingobacteriales (65.22%)
70 77722 bp 41.93 10.87 90.93
scnpilot_solids1_trim150_scaffold_2858
Order: Sphingobacteriales (54.55%)
11 7491 bp 41.17 10.87 86.82
scnpilot_solids1_trim150_scaffold_733
Order: Sphingobacteriales (50%)
21 22951 bp 42.74 10.88 83.22
scnpilot_solids1_trim150_scaffold_3120
Species: Niastella koreensis (85.71%)
7 6963 bp 42.60 10.92 84.92
scnpilot_solids1_trim150_scaffold_1345
Species: Niastella koreensis (54.55%)
11 13902 bp 43.10 10.96 89.88
scnpilot_solids1_trim150_scaffold_125
Order: Sphingobacteriales (78.46%)
66 85240 bp 42.27 10.98 90.37
scnpilot_solids1_trim150_scaffold_660
Order: Sphingobacteriales (59.38%)
33 40747 bp 45.44 10.98 91.49
scnpilot_solids1_trim150_scaffold_1180
Genus: Flavihumibacter (50%)
10 15283 bp 43.18 10.98 89.31
scnpilot_solids1_trim150_scaffold_315
Order: Sphingobacteriales (70.45%)
44 46028 bp 40.76 10.98 85.55
scnpilot_solids1_trim150_scaffold_602
Order: Sphingobacteriales (69.57%)
23 26979 bp 41.46 11.00 87.85
scnpilot_solids1_trim150_scaffold_115
Order: Sphingobacteriales (70.79%)
94 89933 bp 41.38 11.04 87.78
scnpilot_solids1_trim150_scaffold_92
Order: Sphingobacteriales (64.77%)
88 112542 bp 42.28 11.06 88.66
scnpilot_solids1_trim150_scaffold_1849
Species: Flavihumibacter solisilvae (50%)
6 10697 bp 42.47 11.06 96.78
scnpilot_solids1_trim150_scaffold_225
Order: Sphingobacteriales (67.31%)
52 57878 bp 42.08 11.09 87.46
Displaying items 1-50 of 122 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.