ggKbase home page

scnpilot_solids1_trim150_scaffold_2753

Search features with annotation key words

Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2753_1

Not on your lists

1..255
-----------------
DNA (255bp)
protein (85aa)
Elongation factor Tu (EF-Tu) (P-43) n=1 Tax=mine drainage metagenome RepID=E6PK11_9ZZZZ
Elongation factor Tu (EF-Tu) (P-43) {ECO:0000313|EMBL:CBH95262.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
translation elongation factor Tu; K02358 elongation factor Tu
scnpilot_solids1_trim150_scaffold_2753_trna_1
unknown

Not on your lists

272..351
-----------------
DNA (80bp)
transferRNA Trp
scnpilot_solids1_trim150_scaffold_2753_2
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

479..805
-----------------
DNA (327bp)
protein (109aa)
Protein translocase subunit SecE n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0IXK3_COMT2
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=688245 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (strain CNB-2).;"
scnpilot_solids1_trim150_scaffold_2753_3
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

805..1392
-----------------
DNA (588bp)
protein (196aa)
Transcription termination/antitermination protein NusG n=1 Tax=Acidovorax sp. NO-1 RepID=H0C452_9BURK rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
NusG antitermination factor rbh
scnpilot_solids1_trim150_scaffold_2753_4
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1520..1951
-----------------
DNA (432bp)
protein (144aa)
50S ribosomal protein L11 n=1 Tax=Comamonas sp. B-9 RepID=UPI000395637F
rplK; 50S ribosomal protein l11; K02867 large subunit ribosomal protein L11
50S ribosomal protein L11 {ECO:0000255|HAMAP-Rule:MF_00736}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_2753_5
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1952..2647
-----------------
DNA (696bp)
protein (232aa)
50S ribosomal protein L1 n=1 Tax=Acidovorax avenae RepID=UPI000370CDDD rbh
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 rbh
Tax=GWA2_Curvibacter_64_110_curated
scnpilot_solids1_trim150_scaffold_2753_6
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2885..3391
-----------------
DNA (507bp)
protein (169aa)
50S ribosomal protein L10 n=2 Tax=Acidovorax RepID=RL10_ACIAC
rplJ; 50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_solids1_trim150_scaffold_2753_7
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3444..3824
-----------------
DNA (381bp)
protein (127aa)
50S ribosomal protein L7/L12 n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WY92_COMTE
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
scnpilot_solids1_trim150_scaffold_2753_8
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4104..8045
-----------------
DNA (3942bp)
protein (1314aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] rbh
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=RPOB_ACIAC rbh
Displaying 9 items

View Taxonomy