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scnpilot_solids1_trim150_scaffold_7

Search features with annotation key words

Displaying items 1-30 of 539 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_7_trna_9
unknown

Not on your lists

comp(87..159)
DNA (73bp)
transferRNA Gly
scnpilot_solids1_trim150_scaffold_7_1
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

416..1423
DNA (1008bp) protein (336aa)
UDP-N-acetylenolpyruvoylglucosamine reductase {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00041869}; EC=1.3.1.98 {ECO:0000256|HAMAP-Rule:MF_00037, ECO:0000256|SAAS:SAAS00057125};; UDP-N-acetylmuramate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00037}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158) rbh
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI000308F426 rbh
scnpilot_solids1_trim150_scaffold_7_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1434..2225)
DNA (792bp) protein (264aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
dihydrodipicolinate reductase; K00215 dihydrodipicolinate reductase [EC:1.3.1.26] rbh
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GP00_PUSST rbh
scnpilot_solids1_trim150_scaffold_7_3
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2228..2788)
DNA (561bp) protein (187aa)
Outer membrane protein assembly factor BamE n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNZ9_PUSST
Outer membrane protein assembly factor BamE {ECO:0000256|HAMAP-Rule:MF_00925}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
outer membrane lipoprotein; K06186 small protein A
scnpilot_solids1_trim150_scaffold_7_4
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2950..3375
DNA (426bp) protein (142aa)
Ferric ion uptake regulator n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNZ8_PUSST
Ferric uptake regulation protein FUR {ECO:0000313|EMBL:CDM23789.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ferric ion uptake regulator; K03711 Fur family transcriptional regulator, ferric uptake regulator
scnpilot_solids1_trim150_scaffold_7_5
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3466..5115)
DNA (1650bp) protein (550aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031EC7A2 rbh
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128, ECO:0000313|EMBL:CDM23790.1}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
DNA repair protein; K03631 DNA repair protein RecN (Recombination protein N) rbh
scnpilot_solids1_trim150_scaffold_7_6
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5122..6033)
DNA (912bp) protein (304aa)
NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037468}; EC=2.7.1.23 {ECO:0000256|HAMAP-Rule:MF_00361, ECO:0000256|SAAS:SAAS00037533};; ATP-dependent NAD kinase {ECO:0000256|HAMAP-Rule:MF_00361}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
inorganic polyphosphate/ATP-NAD kinase; K00858 NAD+ kinase [EC:2.7.1.23] rbh
Probable inorganic polyphosphate/ATP-NAD kinase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNZ6_PUSST rbh
scnpilot_solids1_trim150_scaffold_7_7
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6154..7167
DNA (1014bp) protein (338aa)
HrcA family transcriptional regulator n=1 Tax=Pusillimonas noertemannii RepID=UPI000372E9E5 rbh
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000313|EMBL:CDM23792.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor rbh
scnpilot_solids1_trim150_scaffold_7_8
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7210..8256
DNA (1047bp) protein (349aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ferrochelatase; K01772 ferrochelatase [EC:4.99.1.1] rbh
Ferrochelatase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNZ4_PUSST rbh
scnpilot_solids1_trim150_scaffold_7_9
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8381..8962
DNA (582bp) protein (194aa)
Protein GrpE n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNZ3_PUSST
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
GrpE chaperone; K03687 molecular chaperone GrpE
scnpilot_solids1_trim150_scaffold_7_10
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9041..10963
DNA (1923bp) protein (641aa)
Chaperone protein DnaK n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F1M5_9BURK rbh
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332, ECO:0000313|EMBL:CDM23795.1}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
dnaK; molecular chaperone DnaK; K04043 molecular chaperone DnaK rbh
scnpilot_solids1_trim150_scaffold_7_11
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11144..12274
DNA (1131bp) protein (377aa)
Chaperone protein DnaJ n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNZ1_PUSST rbh
molecular chaperone DnaJ; K03686 molecular chaperone DnaJ rbh
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
scnpilot_solids1_trim150_scaffold_7_12
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12471..13862
DNA (1392bp) protein (464aa)
Xanthine/uracil/vitamin C permease n=1 Tax=Brevibacterium casei S18 RepID=K9AJY0_9MICO rbh
Xanthine permease {ECO:0000313|EMBL:CDM22650.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
xanthine/uracil/vitamin C permease rbh
scnpilot_solids1_trim150_scaffold_7_13
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13936..14946)
DNA (1011bp) protein (337aa)
LacI family transcriptional regulator n=1 Tax=Brevibacterium casei S18 RepID=K9AK24_9MICO rbh
Transcriptional regulator, LacI-family {ECO:0000313|EMBL:CDM22653.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
LacI family transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_7_14
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14964..15674)
DNA (711bp) protein (237aa)
permease n=1 Tax=Glaciibacter superstes RepID=UPI0003B3B13E rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM22652.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein; K07090
scnpilot_solids1_trim150_scaffold_7_15
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15671..17068)
DNA (1398bp) protein (466aa)
hydrolase (EC:3.-.-.-) rbh
Amidohydrolase n=1 Tax=Brevibacterium casei S18 RepID=K9ANL2_9MICO rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM22651.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
scnpilot_solids1_trim150_scaffold_7_16
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17256..20057)
DNA (2802bp) protein (934aa)
zinc protease; K07263 zinc protease [EC:3.4.24.-] rbh
Putative zinc protease n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNZ0_PUSST rbh
Putative zinc protease {ECO:0000313|EMBL:CDM23800.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
scnpilot_solids1_trim150_scaffold_7_17
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20114..21283)
DNA (1170bp) protein (390aa)
Thioredoxin reductase {ECO:0000313|EMBL:CDM23826.1}; EC=1.8.1.9 {ECO:0000313|EMBL:CDM23826.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
von Willebrand factor A n=1 Tax=Pusillimonas noertemannii RepID=UPI0003002266 rbh
hypothetical protein; K09989 hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_7_18
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21314..21928)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNY8_PUSST
N-acetyltransferase {ECO:0000313|EMBL:CDM23827.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_7_19
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22015..22875)
DNA (861bp) protein (287aa)
AAA family ATPase n=1 Tax=Alcaligenes faecalis RepID=E7DDI6_ALCFA rbh
ATPase {ECO:0000313|EMBL:CDM23828.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
ATPase rbh
scnpilot_solids1_trim150_scaffold_7_20
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23039..23395
DNA (357bp) protein (119aa)
Putative cytochrome n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNY6_PUSST
Cytochrome c4 {ECO:0000313|EMBL:CDM23829.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
cytochrome
scnpilot_solids1_trim150_scaffold_7_21
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23405..23758
DNA (354bp) protein (118aa)
Putative cytochrome n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNY5_PUSST
Cytochrome c4 {ECO:0000313|EMBL:CDM23830.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
cytochrome
scnpilot_solids1_trim150_scaffold_7_22
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23846..24277)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNY4_PUSST
Uncharacterized protein {ECO:0000313|EMBL:CDM23831.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_7_23
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24461..25717
DNA (1257bp) protein (419aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446, ECO:0000313|EMBL:CDM23832.1}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446, ECO:0000313|EMBL:CDM23832.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
isocitrate dehydrogenase; K00031 isocitrate dehydrogenase [EC:1.1.1.42] rbh
Isocitrate dehydrogenase [NADP] n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GNY3_PUSST rbh
scnpilot_solids1_trim150_scaffold_7_24
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25870..26781)
DNA (912bp) protein (304aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Rhizobium sp. CF142 RepID=J2L3Q5_9RHIZ rbh
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:EJJ28102.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
Zn-dependent hydrolase, glyoxylase
scnpilot_solids1_trim150_scaffold_7_25
Thalassospira permensis, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26815..27825)
DNA (1011bp) protein (337aa)
AraC family transcriptional regulator n=1 Tax=Thalassospira xiamenensis M-5 = DSM 17429 RepID=K2MM87_9PROT rbh
AraC family transcriptional regulator {ECO:0000313|EMBL:KEO53793.1}; TaxID=1353532 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira permensis NBRC 106175.;"
araC family transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_7_26
Alcanivorax dieselolei, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27925..29127
DNA (1203bp) protein (401aa)
Major facilitator superfamily transporter n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CAC5_ALCDB rbh
Major facilitator superfamily transporter rbh
Major facilitator superfamily transporter {ECO:0000313|EMBL:AFT69583.1}; TaxID=930169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5).;"
scnpilot_solids1_trim150_scaffold_7_27
Cupriavidus necator, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29152..30381)
DNA (1230bp) protein (410aa)
metC2; cystathionine beta-lyase MetC (EC:4.4.1.8); K01760 cystathionine beta-lyase [EC:4.4.1.8] rbh
Cystathionine beta-lyase MetC {ECO:0000313|EMBL:AEI77292.1}; EC=4.4.1.8 {ECO:0000313|EMBL:AEI77292.1};; TaxID=1042878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) (Ralstonia; eutropha).;"
Cystathionine beta-lyase MetC n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=G0EXT5_CUPNN rbh
scnpilot_solids1_trim150_scaffold_7_28
Burkholderia rhizoxinica, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30501..30986
DNA (486bp) protein (162aa)
Transcriptional regulator, AsnC family n=1 Tax=Burkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454) RepID=E5ATK8_BURRH
AsnC family transcriptional regulator; K05800 Lrp/AsnC family transcriptional regulator
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:CBW76432.1}; TaxID=882378 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia rhizoxinica (strain DSM 19002 / CIP 109453 / HKI 454).;"
scnpilot_solids1_trim150_scaffold_7_29
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31055..33631
DNA (2577bp) protein (859aa)
Putative transmembrane protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BX02_9BURK rbh
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:CDM23840.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
diguanylate cyclase (GGDEF) domain-containing protein
Displaying items 1-30 of 539 in total

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