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scnpilot_solids1_trim150_scaffold_411

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Displaying items 1-30 of 34 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_411_1
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..145
DNA (144bp) protein (48aa)
Elongation factor Tu C-terminal domain protein n=1 Tax=Bordetella pertussis STO1-CHLA-0006 RepID=V8ZIY4_BORPT
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
tufA; elongation factor Tu
scnpilot_solids1_trim150_scaffold_411_trna_1
unknown

Not on your lists

227..299
DNA (73bp)
transferRNA Trp
scnpilot_solids1_trim150_scaffold_411_2
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

343..723
DNA (381bp) protein (127aa)
Protein translocase subunit SecE n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXM3_PUSST
Protein translocase subunit SecE {ECO:0000256|HAMAP-Rule:MF_00422}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE
scnpilot_solids1_trim150_scaffold_411_3
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

738..1271
DNA (534bp) protein (178aa)
transcription antitermination protein NusG n=1 Tax=Pusillimonas noertemannii RepID=UPI0002D2DCE4 rbh
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
transcription antitermination protein NusG; K02601 transcriptional antiterminator NusG rbh
scnpilot_solids1_trim150_scaffold_411_4
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1364..1798
DNA (435bp) protein (145aa)
50S ribosomal protein L11 n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UHT7_ADVKW
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1036672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.;" source="Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001); (Tetrathiobacter kashmirensis).;"
scnpilot_solids1_trim150_scaffold_411_5
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1801..2496
DNA (696bp) protein (232aa)
50S ribosomal protein L1 n=1 Tax=Bordetella avium (strain 197N) RepID=RL1_BORA1 rbh
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 rbh
scnpilot_solids1_trim150_scaffold_411_6
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2725..3249
DNA (525bp) protein (175aa)
50S ribosomal protein L10 n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GXL9_PUSST
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
50S ribosomal protein L10; K02864 large subunit ribosomal protein L10
scnpilot_solids1_trim150_scaffold_411_7
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3323..3703
DNA (381bp) protein (127aa)
50S ribosomal protein L7/L12 n=3 Tax=Alcaligenes RepID=J0BG51_ALCFA
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
50S ribosomal protein L7/L12; K02935 large subunit ribosomal protein L7/L12
scnpilot_solids1_trim150_scaffold_411_8
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3824..7972
DNA (4149bp) protein (1383aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:CDM22634.1};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
DNA-directed RNA polymerase subunit beta; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] rbh
DNA-directed RNA polymerase subunit beta n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F3A3B7 rbh
scnpilot_solids1_trim150_scaffold_411_9
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7972..12231
DNA (4260bp) protein (1420aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322, ECO:0000313|EMBL:CDM22633.1};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
DNA-directed RNA polymerase; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] rbh
DNA-directed RNA polymerase subunit beta' n=1 Tax=Alcaligenes sp. EGD-AK7 RepID=U7U8B0_9BURK rbh
scnpilot_solids1_trim150_scaffold_411_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12323..13528)
DNA (1206bp) protein (402aa)
Mandelate racemase/muconate lactonizing protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CTU5_VARPS rbh
mandelate racemase/muconate lactonizing protein rbh
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:ACS18295.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
scnpilot_solids1_trim150_scaffold_411_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13597..14514
DNA (918bp) protein (306aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037FCAFF rbh
LysR family transcriptional regulator rbh
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ACS18294.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
scnpilot_solids1_trim150_scaffold_411_12
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14588..15406
DNA (819bp) protein (273aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
aroE; shikimate 5-dehydrogenase (EC:1.1.1.25); K00014 shikimate dehydrogenase [EC:1.1.1.25]
Shikimate dehydrogenase n=1 Tax=Thauera sp. 27 RepID=N6YKZ8_9RHOO
scnpilot_solids1_trim150_scaffold_411_13
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15450..16370)
DNA (921bp) protein (307aa)
Putative transport protein permease of the drug/metabolite transporter (DMT) superfamily n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AIC0_AZOBR
putative transport protein; permease of the drug/metabolite transporter (DMT) superfamily
Putative transport protein permease of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:CCC97023.1}; TaxID=1064539 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense Sp245.;"
scnpilot_solids1_trim150_scaffold_411_14
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16607..17737
DNA (1131bp) protein (377aa)
C4-dicarboxylate ABC transporter n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B48753 rbh
Trap dicarboxylate transporter-dctp subunit {ECO:0000313|EMBL:EEX12712.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
TRAP dicarboxylate family transporter subunit DctP rbh
scnpilot_solids1_trim150_scaffold_411_15
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17762..19789
DNA (2028bp) protein (676aa)
5-oxoprolinase; K01473 N-methylhydantoinase A [EC:3.5.2.14] rbh
hydantoinase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B786F3 rbh
5-oxoprolinase {ECO:0000313|EMBL:ACM01856.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain KD131 / KCTC 12085).;"
scnpilot_solids1_trim150_scaffold_411_16
Cupriavidus pinatubonensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19786..21483
DNA (1698bp) protein (566aa)
5-oxoprolinase (ATP-hydrolyzing) (EC:3.5.2.9); K01474 N-methylhydantoinase B [EC:3.5.2.14] rbh
5-oxoprolinase (ATP-hydrolyzing) {ECO:0000313|EMBL:AAZ65569.1}; EC=3.5.2.9 {ECO:0000313|EMBL:AAZ65569.1};; TaxID=264198 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) (Ralstonia; eutropha (strain JMP 134)).;"
methylhydantoinase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B41173 rbh
scnpilot_solids1_trim150_scaffold_411_17
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21514..22035
DNA (522bp) protein (174aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B2F9B5
Tripartite ATP-independent periplasmic transporter, DctQ component {ECO:0000313|EMBL:EEX12681.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
tripartite ATP-independent periplasmic transporter DctQ
scnpilot_solids1_trim150_scaffold_411_18
Citreicella sp. SE45, Citreicella, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22067..23374
DNA (1308bp) protein (436aa)
C4-dicarboxylate ABC transporter n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B6B5D1 rbh
Trap dicarboxylate transporter, dctm subunit {ECO:0000313|EMBL:EEX13052.1}; TaxID=501479 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Citreicella.;" source="Citreicella sp. SE45.;"
TRAP dicarboxylate transporter subunit DctM rbh
scnpilot_solids1_trim150_scaffold_411_19
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23400..24041
DNA (642bp) protein (214aa)
Transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2NU59_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EKF42865.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
transcriptional regulator, XRE family
scnpilot_solids1_trim150_scaffold_411_20
Streptomyces iranensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24049..25842
DNA (1794bp) protein (598aa)
ggt; gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
hypothetical protein n=1 Tax=Streptomyces sulphureus RepID=UPI00037AC103 rbh
Gamma-glutamyltransferase {ECO:0000313|EMBL:CDR17536.1}; TaxID=576784 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces iranensis.;"
scnpilot_solids1_trim150_scaffold_411_21
Burkholderia gladioli, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25827..27128
DNA (1302bp) protein (434aa)
FAD-dependent oxidoreductase n=1 Tax=Burkholderia bryophila RepID=UPI0003758F7F rbh
FAD dependent oxidoreductase rbh
FAD binding domain protein {ECO:0000313|EMBL:AJX00117.1}; TaxID=28095 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia gladioli (Pseudomonas marginata) (Phytomonas marginata).;"
scnpilot_solids1_trim150_scaffold_411_22
Pseudomonas extremaustralis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27206..28012)
DNA (807bp) protein (269aa)
xylose isomerase n=1 Tax=Pseudomonas extremaustralis RepID=UPI00028A0F9A
Xylose isomerase {ECO:0000313|EMBL:EZI27584.1}; TaxID=1117958 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas extremaustralis 14-3 substr. 14-3b.;"
xylose isomerase domain-containing protein
scnpilot_solids1_trim150_scaffold_411_23
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28052..28705)
DNA (654bp) protein (218aa)
TetR family transcriptional regulator n=1 Tax=Acidovorax sp. KKS102 RepID=K0I543_9BURK
Transcriptional regulator, TetR family {ECO:0000313|EMBL:CDM22627.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
TetR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_411_24
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28698..29144)
DNA (447bp) protein (149aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000313|EMBL:CDM22622.1};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase n=1 Tax=Pseudomonas sp. 313 RepID=UPI0002DE5978
scnpilot_solids1_trim150_scaffold_411_25
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29218..30234)
DNA (1017bp) protein (339aa)
TRAP dicarboxylate transporter subunit DctP n=1 Tax=Thauera sp. 63 RepID=N6YBZ7_9RHOO rbh
TRAP-type C4-dicarboxylate transport system, periplasmic component {ECO:0000313|EMBL:CDM22621.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
TRAP dicarboxylate transporter subunit DctP rbh
scnpilot_solids1_trim150_scaffold_411_26
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30258..31538)
DNA (1281bp) protein (427aa)
dehydroascorbate transporter n=1 Tax=Caldimonas manganoxidans RepID=UPI00037982D5 rbh
TRAP-type C4-dicarboxylate transport system, large permease component {ECO:0000313|EMBL:CDM22620.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
TRAP dicarboxylate transporter subunit DctM rbh
scnpilot_solids1_trim150_scaffold_411_27
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31535..32044)
DNA (510bp) protein (170aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00035DD475
TRAP-type transport system, small permease component, predicted N-acetylneuraminate transporter {ECO:0000313|EMBL:CDM22619.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
tripartite ATP-independent periplasmic transporter dctq component
scnpilot_solids1_trim150_scaffold_411_28
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32074..32967)
DNA (894bp) protein (298aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000313|EMBL:CDM22618.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
Quinate/shikimate 5-dehydrogenase I delta (EC:1.1.1.25)
Shikimate dehydrogenase n=4 Tax=Ralstonia solanacearum RepID=M4V423_RALSL
scnpilot_solids1_trim150_scaffold_411_29
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33119..34000)
DNA (882bp) protein (294aa)
4-hydroxyphenylpyruvate dioxygenase {ECO:0000313|EMBL:CDM22615.1}; EC=1.13.11.27 {ECO:0000313|EMBL:CDM22615.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
bllY; 4-hydroxyphenylpyruvate dioxygenase (EC:1.13.11.27)
4-hydroxyphenylpyruvate dioxygenase n=1 Tax=Duganella zoogloeoides RepID=UPI00037031A4
Displaying items 1-30 of 34 in total

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