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scnpilot_solids1_trim150_scaffold_309

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_309_1
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..882)
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBR7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL96908.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
HEAT repeat-containing protein
scnpilot_solids1_trim150_scaffold_309_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1031..2014
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WII7_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL99278.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
TPR repeat-containing protein
scnpilot_solids1_trim150_scaffold_309_3
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2082..2471
DNA (390bp) protein (130aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UW65_PSEUP
Uncharacterized protein {ECO:0000313|EMBL:KGM51887.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_309_4
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2539..4335)
DNA (1797bp) protein (599aa)
Conserved hypothetical secreted protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K8R0_AZOSB rbh
Uncharacterized protein {ECO:0000313|EMBL:AKC88316.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_309_5
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4547..6559
DNA (2013bp) protein (671aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VZ05_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AKC86938.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_309_6
Xanthomonas oryzae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6584..7348)
DNA (765bp) protein (255aa)
pseudouridylate synthase; K06175 tRNA pseudouridine65 synthase [EC:5.4.99.26] rbh
Pseudouridine synthase n=1 Tax=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) RepID=Q5H618_XANOR rbh
Pseudouridylate synthases, 23S RNA-specific {ECO:0000313|EMBL:AAW73602.1}; TaxID=291331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85).;"
scnpilot_solids1_trim150_scaffold_309_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7443..8117)
DNA (675bp) protein (225aa)
Qnr n=1 Tax=Stenotrophomonas maltophilia RepID=B5T012_STEMA rbh
Qnr {ECO:0000313|EMBL:ACG60500.1}; SmQnr1 {ECO:0000313|EMBL:BAG72110.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
qnrB; putative fluoroquinolone resistance protein rbh
scnpilot_solids1_trim150_scaffold_309_8
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8114..9781)
DNA (1668bp) protein (556aa)
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
ubiquinone biosynthesis protein UbiB n=1 Tax=Xanthomonas sacchari RepID=UPI0002629FA6 rbh
2-polyprenylphenol 6-hydroxylase; K03688 ubiquinone biosynthesis protein rbh
scnpilot_solids1_trim150_scaffold_309_9
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9778..10425)
DNA (648bp) protein (216aa)
sterol-binding protein, partial n=1 Tax=Xanthomonas arboricola RepID=UPI00036AE299 rbh
Sterol-binding protein {ECO:0000313|EMBL:AKC80414.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
sterol-binding domain-containing protein rbh
scnpilot_solids1_trim150_scaffold_309_10
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10595..11698
DNA (1104bp) protein (368aa)
D-alanine--D-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732}; EC=6.3.2.4 {ECO:0000256|HAMAP-Rule:MF_00047, ECO:0000256|SAAS:SAAS00232732};; D-Ala-D-Ala ligase {ECO:0000256|HAMAP-Rule:MF_00047}; D-alanylalanine synthetase {ECO:0000256|HAMAP-Rule:MF_00047}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
ddl; D-alanyl-alanine synthetase A (EC:6.3.2.4); K01921 D-alanine-D-alanine ligase [EC:6.3.2.4] rbh
D-alanine--D-alanine ligase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E17695 rbh
scnpilot_solids1_trim150_scaffold_309_11
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11803..12972
DNA (1170bp) protein (390aa)
Major facilitator superfamily MFS_1 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W7N1_ACISJ rbh
major facilitator superfamily transporter rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABM42256.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids1_trim150_scaffold_309_12
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13003..13158)
DNA (156bp) protein (52aa)
UPF0391 membrane protein Smal_0172 n=4 Tax=Stenotrophomonas RepID=B4SSJ5_STRM5
hypothetical protein
UPF0391 membrane protein SSKA14_1335 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
scnpilot_solids1_trim150_scaffold_309_13
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13261..14259)
DNA (999bp) protein (333aa)
3-beta hydroxysteroid dehydrogenase/isomerase family protein in hypothetical gene cluster n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KI91_STEMA rbh
3-beta hydroxysteroid dehydrogenase {ECO:0000313|EMBL:AHY60772.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
3-beta hydroxysteroid dehydrogenase/isomerase family protein in hypothetical gene cluster rbh
scnpilot_solids1_trim150_scaffold_309_14
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14256..15908)
DNA (1653bp) protein (551aa)
peptide synthase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00036CD9FE rbh
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase/Peptide synthase rbh
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase/Peptide synthase {ECO:0000313|EMBL:CCH10779.1}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
scnpilot_solids1_trim150_scaffold_309_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16011..16439
DNA (429bp) protein (143aa)
ferredoxin n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037BF491
Ferredoxin {ECO:0000313|EMBL:KDE87871.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
putative ferredoxin; K06940
scnpilot_solids1_trim150_scaffold_309_16
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16659..17549)
DNA (891bp) protein (297aa)
haloalkane dehalogenase; K01563 haloalkane dehalogenase [EC:3.8.1.5] rbh
Haloalkane dehalogenase n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CLX1_XANCA rbh
Haloalkane dehalogenase {ECO:0000313|EMBL:AEL09164.1}; TaxID=990315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. raphani 756C.;"
scnpilot_solids1_trim150_scaffold_309_17
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17632..18249
DNA (618bp) protein (206aa)
Uracil-DNA glycosylase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WHJ5_9GAMM rbh
Uracil-DNA glycosylase {ECO:0000313|EMBL:EIL98936.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
uracil-DNA glycosylase
scnpilot_solids1_trim150_scaffold_309_18
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18399..19127
DNA (729bp) protein (243aa)
YecA family protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPM9_PSEUU rbh
Uncharacterized protein {ECO:0000313|EMBL:AKC86601.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
YecA family protein; K07039 uncharacterized protein rbh
scnpilot_solids1_trim150_scaffold_309_19
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19437..20453)
DNA (1017bp) protein (339aa)
3-oxoacyl-(Acyl carrier protein) synthase III {ECO:0000313|EMBL:EMI47762.1}; EC=2.3.1.41 {ECO:0000313|EMBL:EMI47762.1};; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
3-oxoacyl-ACP synthase; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] rbh
3-oxoacyl-(Acyl carrier protein) synthase III n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TEZ5_STEMA rbh
scnpilot_solids1_trim150_scaffold_309_20
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20671..20982)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TVK7_STEMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDE87874.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
scnpilot_solids1_trim150_scaffold_309_21
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21085..23943)
DNA (2859bp) protein (953aa)
peptidase M16 n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F81B72 rbh
Peptidase M16 {ECO:0000313|EMBL:AHY60778.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
zinc protease rbh
scnpilot_solids1_trim150_scaffold_309_22
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24374..24769
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031B14D0
Uncharacterized protein {ECO:0000313|EMBL:AHY60779.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_309_23
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24896..25375
DNA (480bp) protein (160aa)
tRNA/rRNA methyltransferase SpoU; K03216 tRNA (cytidine/uridine-2'-O-)-methyltransferase [EC:2.1.1.207]
tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Stenotrophomonas maltophilia (strain R551-3) RepID=B4SSI6_STRM5
scnpilot_solids1_trim150_scaffold_309_24
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25463..25930
DNA (468bp) protein (156aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003822FAC
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:ADV26346.1}; Flags: Precursor;; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_309_25
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25949..27193)
DNA (1245bp) protein (415aa)
CoA transferase n=1 Tax=Microbulbifer agarilyticus RepID=UPI000255B968 rbh
NODE_55, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96161.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
L-carnitine dehydratase/bile acid-inducible protein F rbh
scnpilot_solids1_trim150_scaffold_309_26
unknown

Not on your lists

27486..27677
DNA (192bp) protein (64aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_309_27
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28133..29305)
DNA (1173bp) protein (391aa)
acyl-CoA dehydrogenase domain-containing protein; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7]
acyl-CoA dehydrogenase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EA8416 rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KGM55881.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
scnpilot_solids1_trim150_scaffold_309_28
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29551..30930
DNA (1380bp) protein (460aa)
amino acid transporter n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI000379DDFA rbh
Amino acid transporter {ECO:0000313|EMBL:AJC48137.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
amino acid transporter; K03293 amino acid transporter, AAT family rbh
scnpilot_solids1_trim150_scaffold_309_29
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31027..31614
DNA (588bp) protein (196aa)
Uncharacterized protein n=1 Tax=Novosphingobium sp. AP12 RepID=J3A8J2_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAO39916.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_309_30

Not on your lists

31679..31942
DNA (264bp) protein (88aa)
Putative integron gene cassette protein n=1 Tax=uncultured bacterium RepID=B7VE80_9BACT
Putative integron gene cassette protein {ECO:0000313|EMBL:CAS02934.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Displaying items 1-30 of 43 in total

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