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scnpilot_solids1_trim150_scaffold_427

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_427_1
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(71..592)
DNA (522bp) protein (174aa)
cytochrome C n=2 Tax=Xanthomonas RepID=UPI0003786FE0
Cytochrome C {ECO:0000313|EMBL:AJC46328.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
putative transmembrane-anchored cytochrome c
scnpilot_solids1_trim150_scaffold_427_2
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(694..1320)
DNA (627bp) protein (209aa)
AcrR family transcriptional regulator n=1 Tax=Xanthomonas sp. SHU199 RepID=UPI000376B714 rbh
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EKU26624.1}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
AcrR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_427_3
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1466..2629
DNA (1164bp) protein (388aa)
acyl-CoA dehydrogenase domain-containing protein; K00253 isovaleryl-CoA dehydrogenase [EC:1.3.8.4] rbh
isovaleryl-CoA dehydrogenase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E4383F rbh
Stenotrophomonas maltophilia strain ZBG7B contig_36, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86152.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
scnpilot_solids1_trim150_scaffold_427_4
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2789..4399
DNA (1611bp) protein (537aa)
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC:6.4.1.4); K01969 3-methylcrotonyl-CoA carboxylase beta subunit [EC:6.4.1.4] rbh
methylcrotonoyl-CoA carboxylase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E0042E rbh
Acyl CoA carboxyltransferase {ECO:0000313|EMBL:EZP42879.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
scnpilot_solids1_trim150_scaffold_427_5
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4773..6671
DNA (1899bp) protein (633aa)
methylcrotonoyl-CoA carboxylase (EC:6.4.1.4); K01968 3-methylcrotonyl-CoA carboxylase alpha subunit [EC:6.4.1.4] rbh
3-methylcrotonyl-CoA carboxylase subunit alpha n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D71E6D rbh
Stenotrophomonas maltophilia strain ZBG7B contig_36, whole genome shotgun sequence {ECO:0000313|EMBL:KIP86210.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
scnpilot_solids1_trim150_scaffold_427_6
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6791..7963)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=1 Tax=Xanthomonas hortorum pv. carotae str. M081 RepID=V7ZJM6_9XANT rbh
Dehydrogenase {ECO:0000313|EMBL:KGM51258.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
nitroreductase rbh
scnpilot_solids1_trim150_scaffold_427_7
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8066..8422
DNA (357bp) protein (119aa)
Uncharacterized protein n=2 Tax=Xanthomonas campestris pv. citri RepID=Q8PQR2_XANAC
Hypothetical Protein
Uncharacterized protein {ECO:0000313|EMBL:AJZ38070.1}; TaxID=611301 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri subsp. citri.;"
scnpilot_solids1_trim150_scaffold_427_8
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8362..11025)
DNA (2664bp) protein (888aa)
Tetratricopeptide repeat family n=1 Tax=Xanthomonas campestris pv. raphani 756C RepID=G0CL50_XANCA rbh
hypothetical protein rbh
Putative membrane protein {ECO:0000313|EMBL:CEM56478.1}; TaxID=340 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris pv. campestris.;"
scnpilot_solids1_trim150_scaffold_427_9
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11027..12049)
DNA (1023bp) protein (341aa)
cyclic nucleotide-binding protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DF0BEF rbh
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:AHY60752.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
putative cyclic nucleotide-binding and GGDEF domain regulator rbh
scnpilot_solids1_trim150_scaffold_427_10
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12256..13587)
DNA (1332bp) protein (444aa)
isocitrate lyase; K01637 isocitrate lyase [EC:4.1.3.1]
Isocitrate lyase n=1 Tax=Limnobacter sp. MED105 RepID=A6GT13_9BURK rbh
Isocitrate lyase {ECO:0000313|EMBL:EDM82685.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
scnpilot_solids1_trim150_scaffold_427_11
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13642..15282)
DNA (1641bp) protein (547aa)
Malate synthase {ECO:0000313|EMBL:EZP42871.1}; EC=2.3.3.9 {ECO:0000313|EMBL:EZP42871.1};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
malate synthase (EC:2.3.3.9); K01638 malate synthase [EC:2.3.3.9] rbh
Malate synthase n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TEX7_STEMA rbh
scnpilot_solids1_trim150_scaffold_427_12
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15391..16359
DNA (969bp) protein (323aa)
LysR family transcriptional regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00035D212A rbh
Putative RuBisCO transcriptional regulator {ECO:0000313|EMBL:EZP42870.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
LysR family transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_427_13
Pseudoxanthomonas mexicana, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16457..18523
DNA (2067bp) protein (689aa)
Dipeptidyl aminopeptidase BIII {ECO:0000312|EMBL:BAO18428.1}; Short=DAP BIII {ECO:0000303|PubMed:8892831};; EC=3.4.14.- {ECO:0000269|PubMed:8892831};; Flags: Precursor;; TaxID=128785 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas mexicana.;"
Dipeptidyl aminopeptidase BIII n=1 Tax=Pseudoxanthomonas mexicana RepID=V5YMB3_9GAMM rbh
dipeptidyl anminopeptidase rbh
scnpilot_solids1_trim150_scaffold_427_14
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18601..20298)
DNA (1698bp) protein (566aa)
D-lactate dehydrogenase (EC:1.1.1.28); K03777 D-lactate dehydrogenase [EC:1.1.1.28] rbh
D-lactate dehydrogenase {ECO:0000256|PIRNR:PIRNR000101}; EC=1.1.1.28 {ECO:0000256|PIRNR:PIRNR000101};; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
D-lactate dehydrogenase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K431_STEMA rbh
scnpilot_solids1_trim150_scaffold_427_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20295..21434)
DNA (1140bp) protein (380aa)
L-lactate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01559, ECO:0000256|SAAS:SAAS00019080}; EC=1.1.-.- {ECO:0000256|HAMAP-Rule:MF_01559, ECO:0000256|SAAS:SAAS00019079};; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
lctD; putative L-lactate dehydrogenase (EC:1.1.2.3); K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3] rbh
L-lactate dehydrogenase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037B969A rbh
scnpilot_solids1_trim150_scaffold_427_16
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21431..22216)
DNA (786bp) protein (262aa)
GntR family transcriptional regulator n=2 Tax=Stenotrophomonas maltophilia RepID=M5U1A0_STEMA rbh
GntR family transcriptional regulator {ECO:0000313|EMBL:EZP46822.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
GntR family transcriptional regulator; K14348 GntR family transcriptional regulator, L-lactate dehydrogenase operon regulator rbh
scnpilot_solids1_trim150_scaffold_427_17
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22233..23891)
DNA (1659bp) protein (553aa)
L-lactate permease n=1 Tax=Stenotrophomonas maltophilia EPM1 RepID=M3EXE6_STEMA rbh
lctP; putative L-lactate permease; K00427 L-lactate permease rbh
L-lactate permease {ECO:0000313|EMBL:KDE91020.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
scnpilot_solids1_trim150_scaffold_427_18
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24262..24963)
DNA (702bp) protein (234aa)
histidine kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E91790 rbh
LytTR family two component transcriptional regulator rbh
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:ACF49821.1}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
scnpilot_solids1_trim150_scaffold_427_19
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24951..26660)
DNA (1710bp) protein (570aa)
Sensor protein lytS {ECO:0000313|EMBL:CCP14146.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CCP14146.1};; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
Sensor protein lytS n=1 Tax=Stenotrophomonas maltophilia RA8 RepID=M5CSK8_STEMA rbh
C-terminal ATPase domain signal transduction-like protein rbh
scnpilot_solids1_trim150_scaffold_427_20
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26841..28343
DNA (1503bp) protein (501aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003723FB9 rbh
alpha/beta hydrolase fold domain-containing protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CCP14147.1}; TaxID=1118157 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia RA8.;"
scnpilot_solids1_trim150_scaffold_427_21
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28538..29014)
DNA (477bp) protein (159aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
putative peptidase; K03100 signal peptidase I [EC:3.4.21.89]
Signal peptidase I n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KJT7_STEMA
scnpilot_solids1_trim150_scaffold_427_22
unknown

Not on your lists

comp(29015..29167)
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_427_23
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29333..29830
DNA (498bp) protein (166aa)
3-dehydroquinate dehydratase; K03785 3-dehydroquinate dehydratase I [EC:4.2.1.10]
3-dehydroquinate dehydratase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E52C1D
Stenotrophomonas maltophilia strain ZBG7B contig_53, whole genome shotgun sequence {ECO:0000313|EMBL:KIP84427.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
scnpilot_solids1_trim150_scaffold_427_24
unknown

Not on your lists

29817..30044
DNA (228bp) protein (76aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_427_25
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30136..32292)
DNA (2157bp) protein (719aa)
dcp; putative peptidyl-dipeptidase Dcp (EC:3.4.15.5); K01284 peptidyl-dipeptidase Dcp [EC:3.4.15.5] rbh
dipeptidyl carboxypeptidase II n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000375277F rbh
Dipeptidyl carboxypeptidase II {ECO:0000313|EMBL:AHY60763.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_427_26
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32405..33841)
DNA (1437bp) protein (479aa)
DNA photolyase FAD-binding protein; K01669 deoxyribodipyrimidine photo-lyase [EC:4.1.99.3] rbh
DNA photolyase FAD-binding protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPP1_PSEUU rbh
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:AKC86591.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
scnpilot_solids1_trim150_scaffold_427_27
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33844..34461)
DNA (618bp) protein (206aa)
Phospholipid/glycerol acyltransferase n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPP0_PSEUU rbh
phospholipid/glycerol acyltransferase rbh
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:ADV25995.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_427_28
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34465..34896)
DNA (432bp) protein (144aa)
peptidyl-tRNA hydrolase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002EF3528
Uncharacterized protein {ECO:0000313|EMBL:ELQ11852.1}; TaxID=1205753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens DAR61454.;"
class I peptide chain release factor; K15034 ribosome-associated protein
scnpilot_solids1_trim150_scaffold_427_29
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34931..35875)
DNA (945bp) protein (315aa)
Fibronectin type III domain-containing protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBS1_9GAMM rbh
Fibronectin type III domain-containing protein {ECO:0000313|EMBL:EIL96912.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Fibronectin type III domain-containing protein
scnpilot_solids1_trim150_scaffold_427_30
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35872..38250)
DNA (2379bp) protein (793aa)
Phosphoglycerol transferase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WBS0_9GAMM rbh
Phosphoglycerol transferase {ECO:0000313|EMBL:EIL96911.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
sulfatase rbh
Displaying items 1-30 of 33 in total

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