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scnpilot_solids1_trim150_scaffold_512

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_512_1
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..918)
DNA (918bp) protein (306aa)
ATP-dependent protease n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E3BD0A
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
clpX; ATP-dependent protease ATP-binding subunit ClpX; K03544 ATP-dependent Clp protease ATP-binding subunit ClpX
scnpilot_solids1_trim150_scaffold_512_2
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1046..1672)
DNA (627bp) protein (209aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
clpP; ATP-dependent clp protease proteolytic subunit protein (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] rbh
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Xanthomonas RepID=UPI000310ADA1 rbh
scnpilot_solids1_trim150_scaffold_512_3
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1745..3040)
DNA (1296bp) protein (432aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
trigger factor n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000370280F rbh
trigger factor Tig; K03545 trigger factor rbh
scnpilot_solids1_trim150_scaffold_512_trna_6
unknown

Not on your lists

comp(3212..3293)
DNA (82bp)
transferRNA Leu
scnpilot_solids1_trim150_scaffold_512_trna_5
unknown

Not on your lists

comp(3481..3553)
DNA (73bp)
transferRNA Lys
scnpilot_solids1_trim150_scaffold_512_trna_4
unknown

Not on your lists

comp(3666..3738)
DNA (73bp)
transferRNA Lys
scnpilot_solids1_trim150_scaffold_512_trna_3
unknown

Not on your lists

comp(3823..3896)
DNA (74bp)
transferRNA His
scnpilot_solids1_trim150_scaffold_512_trna_2
unknown

Not on your lists

comp(3933..4006)
DNA (74bp)
transferRNA Arg
scnpilot_solids1_trim150_scaffold_512_trna_1
unknown

Not on your lists

comp(4054..4127)
DNA (74bp)
transferRNA Pro
scnpilot_solids1_trim150_scaffold_512_4
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4757..5761)
DNA (1005bp) protein (335aa)
isocitrate dehydrogenase (NAD(+)) (EC:1.1.1.41); K00030 isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] rbh
Isocitrate dehydrogenase (NAD(+)) {ECO:0000313|EMBL:ADV27883.1}; EC=1.1.1.41 {ECO:0000313|EMBL:ADV27883.1};; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
Isocitrate dehydrogenase (NAD(+)) n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WUV9_PSEUU rbh
scnpilot_solids1_trim150_scaffold_512_5
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5892..6281)
DNA (390bp) protein (130aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
alkylhydroperoxidase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DD2C64
hypothetical protein
scnpilot_solids1_trim150_scaffold_512_6
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6278..6553)
DNA (276bp) protein (92aa)
glutaredoxin n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031E3419
glutaredoxin 3; K03676 glutaredoxin 3
Glutaredoxin 3 {ECO:0000313|EMBL:EJP77931.1}; TaxID=1183154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia Ab55555.;"
scnpilot_solids1_trim150_scaffold_512_7
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6705..8360
DNA (1656bp) protein (552aa)
Putative beta-barrel assembly-enhancing protease {ECO:0000256|HAMAP-Rule:MF_00997}; EC=3.4.-.- {ECO:0000256|HAMAP-Rule:MF_00997};; Flags: Precursor;; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
peptidase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FA0BBE rbh
Protease rbh
scnpilot_solids1_trim150_scaffold_512_8
Xanthomonas oryzae, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8479..9168
DNA (690bp) protein (230aa)
PhoB family transcriptional regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FFE269 rbh
two-component system regulatory protein; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB rbh
Two-component system regulatory protein {ECO:0000313|EMBL:AAW76920.1}; TaxID=291331 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85).;"
scnpilot_solids1_trim150_scaffold_512_9
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9253..10593
DNA (1341bp) protein (447aa)
phoR; phosphate regulon sensor protein PhoR (EC:2.7.13.3); K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CCH11431.1};; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
histidine kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030AE4A8 rbh
scnpilot_solids1_trim150_scaffold_512_10
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10590..12677
DNA (2088bp) protein (696aa)
Polyphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800}; EC=2.7.4.1 {ECO:0000256|HAMAP-Rule:MF_00347, ECO:0000256|RuleBase:RU003800};; ATP-polyphosphate phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00347}; Polyphosphoric acid kinase {ECO:0000256|HAMAP-Rule:MF_00347}; TaxID=1333853 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia MF89.;"
polyphosphate kinase (EC:2.7.4.1); K00937 polyphosphate kinase [EC:2.7.4.1] rbh
Polyphosphate kinase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KT91_STEMA rbh
scnpilot_solids1_trim150_scaffold_512_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12803..14329
DNA (1527bp) protein (509aa)
ppx; putative exopolyphosphatase (EC:3.6.1.11); K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] rbh
Exopolyphosphatase n=3 Tax=Stenotrophomonas maltophilia RepID=J7V5U4_STEMA rbh
Exopolyphosphatase {ECO:0000313|EMBL:KDE92180.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
scnpilot_solids1_trim150_scaffold_512_12
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14449..15585
DNA (1137bp) protein (379aa)
Group 1 glycosyl transferase n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5TPS1_STEMA rbh
Group 1 glycosyl transferase {ECO:0000313|EMBL:EZP43753.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
group 1 glycosyl transferase rbh
scnpilot_solids1_trim150_scaffold_512_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15566..16105
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KK37_STEMA rbh
Phosphoesterase {ECO:0000313|EMBL:KDE92183.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_512_14
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16206..16949
DNA (744bp) protein (248aa)
UDP-2,3-diacylglucosamine hydrolase {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063966}; EC=3.6.1.54 {ECO:0000256|HAMAP-Rule:MF_00575, ECO:0000256|SAAS:SAAS00063978};; UDP-2,3-diacylglucosamine diphosphatase {ECO:0000256|HAMAP-Rule:MF_00575}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
lpxH; UDP-2,3-diacylglucosamine hydrolase (EC:3.6.1.-); K03269 UDP-2,3-diacylglucosamine hydrolase [EC:3.6.1.54] rbh
UDP-2,3-diacylglucosamine hydrolase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DE643A rbh
scnpilot_solids1_trim150_scaffold_512_15
R_Gammaproteobacteria_63_22, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17020..17781
DNA (762bp) protein (254aa)
Tax=RIFCSPHIGHO2_12_FULL_Gammaproteobacteria_63_22_curated
scnpilot_solids1_trim150_scaffold_512_16
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17917..18363)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD0547
Uncharacterized protein {ECO:0000313|EMBL:KHS44123.1}; TaxID=48936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium subterraneum.;"
scnpilot_solids1_trim150_scaffold_512_17
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18465..19307)
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0JZQ2_STEMA rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:AEM50153.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
scnpilot_solids1_trim150_scaffold_512_18
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19311..20777)
DNA (1467bp) protein (489aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Sten
purF; amidophosphoribosyltransferase (EC:2.4.2.14); K00764 amidophosphoribosyltransferase [EC:2.4.2.14] rbh
amidophosphoribosyltransferase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FF9BD5 rbh
scnpilot_solids1_trim150_scaffold_512_19
Xanthomonas citri, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20809..21540)
DNA (732bp) protein (244aa)
Colicin V production protein n=2 Tax=Xanthomonas RepID=Q8PNM3_XANAC
cvpA; colicin V production protein; K03558 membrane protein required for colicin V production
Colicin V production protein {ECO:0000313|EMBL:CEH54584.1}; TaxID=434928 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas citri pv. citri.;"
scnpilot_solids1_trim150_scaffold_512_20
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21577..22581)
DNA (1005bp) protein (335aa)
sporulation protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003814E76 rbh
Sporulation protein {ECO:0000313|EMBL:AJC45698.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_512_21
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22678..23985)
DNA (1308bp) protein (436aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.12); K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] rbh
Bifunctional folylpolyglutamate synthase/dihydrofolate synthase {ECO:0000313|EMBL:EED38559.1}; EC=6.3.2.12 {ECO:0000313|EMBL:EED38559.1};; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
Bifunctional folylpolyglutamate synthase/dihydrofolate synthase n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L076_9GAMM rbh
scnpilot_solids1_trim150_scaffold_512_22
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24082..24855)
DNA (774bp) protein (258aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM53315.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
scnpilot_solids1_trim150_scaffold_512_23
Xanthomonas sp. Nyagatare, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24855..25499)
DNA (645bp) protein (215aa)
phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1] rbh
Fructose-2,6-bisphosphatase n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0BFK6_9XANT rbh
Phosphoglycerate mutase {ECO:0000313|EMBL:KGK57778.1}; TaxID=1552758 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sp. Nyagatare.;"
scnpilot_solids1_trim150_scaffold_512_24
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25727..26578
DNA (852bp) protein (284aa)
hypothetical protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262A88D
Plasmid stabilization protein ParE {ECO:0000313|EMBL:AKC87940.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
Displaying items 1-30 of 33 in total

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