ggKbase home page

scnpilot_solids1_trim150_scaffold_920

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_920_1
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..141)
DNA (141bp) protein (47aa)
Osmotically inducible protein n=2 Tax=Xanthomonas campestris pv. campestris RepID=Q4UWY6_XANC8
osmotically inducible protein; K04063 osmotically inducible protein OsmC
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_920_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

467..877
DNA (411bp) protein (137aa)
Histone-like protein n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5U4X4_STEMA
histone family protein DNA-binding protein
Histone-like protein {ECO:0000313|EMBL:EMI51028.1}; TaxID=1235458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia AU12-09.;"
scnpilot_solids1_trim150_scaffold_920_3
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1377..1682
DNA (306bp) protein (102aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E75044
Uncharacterized protein {ECO:0000313|EMBL:AHY59938.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_920_4
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1776..2363
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EFBB51
Uncharacterized protein {ECO:0000313|EMBL:AHY59940.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_920_5
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2434..2907)
DNA (474bp) protein (158aa)
nuclear protein SET n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030D0371
SET domain protein {ECO:0000313|EMBL:AHY59942.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
nuclear protein SET; K07117
scnpilot_solids1_trim150_scaffold_920_6
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3078..3524
DNA (447bp) protein (149aa)
Transcriptional regulator of the sufRBCDS cluster, Rrf2-family n=3 Tax=Xanthomonas campestris pv. translucens RepID=K8Z3K3_XANCT
Transcriptional regulator of the sufRBCDS cluster, Rrf2-family {ECO:0000313|EMBL:EKU25500.1}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
Iron-sulfur cluster regulator IscR
scnpilot_solids1_trim150_scaffold_920_7
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3542..5017
DNA (1476bp) protein (492aa)
cysteine desulfurase activator complex subunit SufB n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030B4577 rbh
FeS assembly protein SufB; K09014 Fe-S cluster assembly protein SufB rbh
FeS assembly protein SufB {ECO:0000313|EMBL:AEM50328.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
scnpilot_solids1_trim150_scaffold_920_8
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5014..5424
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EA51B8
Uncharacterized protein {ECO:0000313|EMBL:KDE90960.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_920_9
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5464..6228
DNA (765bp) protein (255aa)
FeS assembly ATPase SufC n=2 Tax=Stenotrophomonas maltophilia RepID=B4SN59_STRM5 rbh
FeS assembly ATPase SufC; K09013 Fe-S cluster assembly ATP-binding protein rbh
FeS assembly ATPase SufC {ECO:0000313|EMBL:ACF50704.1}; TaxID=391008 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain R551-3).;"
scnpilot_solids1_trim150_scaffold_920_10
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6228..7529
DNA (1302bp) protein (434aa)
ABC transporter permease n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000307F7BD rbh
ABC transporter permease {ECO:0000313|EMBL:AHY59946.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein; K09015 Fe-S cluster assembly protein SufD rbh
scnpilot_solids1_trim150_scaffold_920_11
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7526..8782
DNA (1257bp) protein (419aa)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
SufS subfamily cysteine desulfurase (EC:4.4.1.16); K11717 cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16] rbh
cysteine desulfurase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00037722A5 rbh
scnpilot_solids1_trim150_scaffold_920_12
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8790..9362
DNA (573bp) protein (191aa)
GCN5-related N-acetyltransferase n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K105_STEMA
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:AEM50323.1}; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
scnpilot_solids1_trim150_scaffold_920_13
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9359..9691
DNA (333bp) protein (111aa)
Rieske (2Fe-2S) iron-sulfur domain-containing protein n=1 Tax=Stenotrophomonas maltophilia JV3 RepID=G0K104_STEMA
Benzene 1,2-dioxygenase, ferredoxin protein {ECO:0000313|EMBL:EZP45874.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
Rieske (2Fe-2S) domain-containing protein; K05710 dioxygenase ferredoxin subunit
scnpilot_solids1_trim150_scaffold_920_14
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10340..12622
DNA (2283bp) protein (761aa)
Ferrichrome-iron receptor n=1 Tax=Stenotrophomonas maltophilia AU12-09 RepID=M5U4V7_STEMA rbh
Putative iron transport receptor protein {ECO:0000313|EMBL:EZP45872.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein rbh
scnpilot_solids1_trim150_scaffold_920_15
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12714..13439
DNA (726bp) protein (242aa)
FOG: TPR repeat, SEL1 subfamily n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KKP4_STEMA rbh
FOG: TPR repeat, SEL1 subfamily; K07126 rbh
FOG: TPR repeat, SEL1 subfamily {ECO:0000313|EMBL:CCH11633.1}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
scnpilot_solids1_trim150_scaffold_920_16
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13449..14126
DNA (678bp) protein (226aa)
PKHD-type hydroxylase BW38_01515 {ECO:0000256|HAMAP-Rule:MF_00657}; EC=1.14.11.- {ECO:0000256|HAMAP-Rule:MF_00657};; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
piuC; Iron-uptake factor PiuC; K07336 PKHD-type hydroxylase [EC:1.14.11.-] rbh
Fe(II)-dependent oxygenase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F2209E rbh
scnpilot_solids1_trim150_scaffold_920_17
unknown

Not on your lists

14275..14682
DNA (408bp) protein (136aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_920_18
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14800..17226
DNA (2427bp) protein (809aa)
TonB-dependent receptor n=1 Tax=Hyphomonas neptunium (strain ATCC 15444) RepID=Q0C1N2_HYPNA rbh
Stenotrophomonas maltophilia strain ZBG7B contig_98, whole genome shotgun sequence {ECO:0000313|EMBL:KIP80445.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
TonB-dependent receptor rbh
scnpilot_solids1_trim150_scaffold_920_19
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17342..17986
DNA (645bp) protein (215aa)
Uncharacterized protein n=2 Tax=Stenotrophomonas maltophilia RepID=J7SXB9_STEMA rbh
Stenotrophomonas maltophilia strain ZBG7B contig_98, whole genome shotgun sequence {ECO:0000313|EMBL:KIP80433.1}; TaxID=40324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (Pseudomonas maltophilia) (Xanthomonas; maltophilia).;"
PepSY-associated TM helix domain-containing protein; K09939 hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_920_20
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18014..18532
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000302644D
Uncharacterized protein {ECO:0000313|EMBL:CCP10320.1}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_920_21
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18557..19306
DNA (750bp) protein (250aa)
ABC transporter permease n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E56DA0 rbh
nickel transport complex, NikM subunit, transmembrane rbh
Nickel transport complex, NikM subunit, transmembrane {ECO:0000313|EMBL:ADV26940.1}; Flags: Precursor;; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_920_22
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19422..20390
DNA (969bp) protein (323aa)
thiamine biosynthesis protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EADFA5 rbh
Thiamin biosynthesis lipoprotein ApbE {ECO:0000313|EMBL:EZP45864.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
apbE; putative thiamine biosynthesis protein; K03734 thiamine biosynthesis lipoprotein rbh
scnpilot_solids1_trim150_scaffold_920_23
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20387..21994
DNA (1608bp) protein (536aa)
flavodoxin/nitric oxide synthase; K00380 sulfite reductase (NADPH) flavoprotein alpha-component [EC:1.8.1.2] rbh
oxidoreductase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F5141C rbh
Sulfite reductase subunit alpha {ECO:0000313|EMBL:AHY59961.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_920_24
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22032..22418)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9FSN4_SORC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAN95414.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
scnpilot_solids1_trim150_scaffold_920_25
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22447..23046)
DNA (600bp) protein (200aa)
HutD-family protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DD7FCA rbh
Protein ves {ECO:0000313|EMBL:CCP10314.1}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
HutD-family protein; K09975 hypothetical protein
scnpilot_solids1_trim150_scaffold_920_26
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23115..24848)
DNA (1734bp) protein (578aa)
Uncharacterized protein {ECO:0000313|EMBL:AKC88107.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
Hydroxybutyrate-dimer hydrolase id=2528226 bin=GWF1_Xanthomonadales_69_6 species=unknown genus=Rhodanobacter taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria rbh
3HB-oligomer hydrolase (3HBOH)
scnpilot_solids1_trim150_scaffold_920_27
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25060..25857
DNA (798bp) protein (266aa)
short-chain dehydrogenase/reductase SDR; K00019 3-hydroxybutyrate dehydrogenase [EC:1.1.1.30]
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:KGO97819.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
Oxidoreductase, short chain dehydrogenase/reductase family id=2528224 bin=GWF1_Xanthomonadales_69_6 species=Labrenzia alexandrii genus=Labrenzia taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria rbh
scnpilot_solids1_trim150_scaffold_920_28
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25978..26643
DNA (666bp) protein (222aa)
Response regulator gacA n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CMA9_STEMA
LuxR family transcriptional regulator {ECO:0000313|EMBL:AKC85571.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
two component LuxR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_920_29
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26677..29952)
DNA (3276bp) protein (1092aa)
Acriflavin resistance protein n=1 Tax=uncultured bacterium A1Q1_fos_600 RepID=L7VQG5_9BACT
Multidrug transporter AcrB {ECO:0000313|EMBL:KGM55283.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
cation/multidrug efflux pump
scnpilot_solids1_trim150_scaffold_920_30
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29954..31012)
DNA (1059bp) protein (353aa)
hypothetical protein n=1 Tax=Xanthomonas sp. SHU308 RepID=UPI00037A9032
Uncharacterized protein {ECO:0000313|EMBL:KGM55284.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
RND family efflux transporter, MFP subunit
Displaying items 1-30 of 36 in total

View Taxonomy