ggKbase home page

scnpilot_solids1_trim150_scaffold_1153

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1153_1
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..709
DNA (708bp) protein (236aa)
Outer membrane efflux protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8KYU6_9GAMM
Outer membrane protein {ECO:0000313|EMBL:EZP46072.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
outer membrane efflux protein
scnpilot_solids1_trim150_scaffold_1153_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

706..1716
DNA (1011bp) protein (337aa)
hemolysin secretion protein D n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000363E31F rbh
Hemolysin secretion protein D {ECO:0000313|EMBL:KDE90758.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
secretion protein HlyD family protein; K01993 HlyD family secretion protein rbh
scnpilot_solids1_trim150_scaffold_1153_3
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1701..2879
DNA (1179bp) protein (393aa)
ABC transporter permease n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030C9808 rbh
ABC transporter permease {ECO:0000313|EMBL:AHY59770.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
ABC-2 type transporter; K09686 antibiotic transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_1153_4
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2876..3994
DNA (1119bp) protein (373aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F045B6 rbh
Membrane protein {ECO:0000313|EMBL:AHY59771.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein; K09686 antibiotic transport system permease protein rbh
scnpilot_solids1_trim150_scaffold_1153_5
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4032..5093
DNA (1062bp) protein (354aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030766D7 rbh
Membrane protein {ECO:0000313|EMBL:AHY60274.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein; K09151 hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_1153_6
Pseudomonas sp. BAY1663, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5241..5840
DNA (600bp) protein (200aa)
hypothetical protein n=1 Tax=Halomonas zhanjiangensis RepID=UPI00036F185C
Putative nitroreductase {ECO:0000313|EMBL:EXF46097.1}; TaxID=1439940 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. BAY1663.;"
hypothetical protein; K07078
scnpilot_solids1_trim150_scaffold_1153_7
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5961..7037)
DNA (1077bp) protein (359aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
nifR3 family TIM-barrel protein; K05540 tRNA-dihydrouridine synthase B [EC:1.-.-.-] rbh
tRNA-dihydrouridine synthase n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CUX1_STEMA rbh
scnpilot_solids1_trim150_scaffold_1153_8
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7138..8091)
DNA (954bp) protein (318aa)
ribokinase (EC:2.7.1.15); K00852 ribokinase [EC:2.7.1.15] rbh
ribokinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FC755E rbh
Ribokinase {ECO:0000313|EMBL:EZP47504.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
scnpilot_solids1_trim150_scaffold_1153_9
Stenotrophomonas sp. SKA14, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8147..9445)
DNA (1299bp) protein (433aa)
Nucleoside transporter n=2 Tax=Stenotrophomonas RepID=B8L0N6_9GAMM rbh
Nucleoside transporter {ECO:0000313|EMBL:EED39257.1}; TaxID=391601 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. SKA14.;"
Nucleoside permease NupC; K03317 concentrative nucleoside transporter, CNT family rbh
scnpilot_solids1_trim150_scaffold_1153_10
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9646..10617
DNA (972bp) protein (324aa)
NADP-dependent aryl-alcohol dehydrogenase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003743DB1 rbh
Alcohol dehydrogenase {ECO:0000313|EMBL:AHY60262.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
voltage-gated potassium channel beta subunit rbh
scnpilot_solids1_trim150_scaffold_1153_11
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10759..10956
DNA (198bp) protein (66aa)
Uncharacterized protein n=2 Tax=Xanthomonas campestris pv. translucens RepID=L7FQ41_XANCT
Uncharacterized protein {ECO:0000313|EMBL:EKU26400.1}; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1153_12
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11099..13282
DNA (2184bp) protein (728aa)
sugar transporter n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002D6BF37 rbh
TonB-dependent hemoglobin/transferrin/lactoferrin family receptor {ECO:0000313|EMBL:EZP47508.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
huvA; outer membrane hemin receptor; K02014 iron complex outermembrane recepter protein rbh
scnpilot_solids1_trim150_scaffold_1153_13
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13356..14294
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia SKK35 RepID=M5CUZ0_STEMA rbh
Uncharacterized protein {ECO:0000313|EMBL:KDE91693.1}; TaxID=1451188 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia M30.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_1153_14
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14344..14697)
DNA (354bp) protein (118aa)
transmembrane signal peptide protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E618D7
Uncharacterized protein {ECO:0000313|EMBL:KER80521.1}; TaxID=454957 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. celebensis.;"
transmembrane signal peptide protein; K09922 hypothetical protein
scnpilot_solids1_trim150_scaffold_1153_15
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14836..15549
DNA (714bp) protein (238aa)
Two-component system regulatory protein n=3 Tax=Xanthomonas campestris pv. translucens RepID=K8Z8G9_XANCT rbh
Response regulator mprA {ECO:0000313|EMBL:CCP42367.1}; TaxID=1261556 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. translucens DSM 18974.;"
two-component system regulatory protein rbh
Displaying 15 items

View Taxonomy