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scnpilot_solids1_trim150_scaffold_1322

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1322_1
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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34..1200
DNA (1167bp) protein (389aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000361193E rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY58667.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_1322_2
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1761..2321
DNA (561bp) protein (187aa)
Cytochrome b561 n=1 Tax=Sphingobium sp. SYK-6 RepID=G2ILK3_9SPHN
cytochrome b561
Cytochrome b561 {ECO:0000313|EMBL:BAK67596.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. SYK-6.;"
scnpilot_solids1_trim150_scaffold_1322_3
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2568..3164)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI00031FB0B8
Electron transporter SenC {ECO:0000313|EMBL:AKC88211.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
electron transporter SCO1/SenC; K07152
scnpilot_solids1_trim150_scaffold_1322_4
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3161..3928)
DNA (768bp) protein (256aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPG9_PSEUU rbh
Uncharacterized protein {ECO:0000313|EMBL:AKC86363.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_1322_5
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3943..5016)
DNA (1074bp) protein (358aa)
nitrite reductase, copper-containing (EC:1.7.2.1); K00368 nitrite reductase (NO-forming) [EC:1.7.2.1] rbh
nitrite reductase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002F75F79 rbh
Nitrite reductase {ECO:0000313|EMBL:AKC86362.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
scnpilot_solids1_trim150_scaffold_1322_6
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5202..6428)
DNA (1227bp) protein (409aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPH2_PSEUU rbh
hypothetical protein rbh
Putative uncharacterized protein {ECO:0000313|EMBL:ADV26216.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_1322_7
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6425..6685)
DNA (261bp) protein (87aa)
Putative uncharacterized protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPH3_PSEUU
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids1_trim150_scaffold_1322_8
RIFOXYA1_FULL_Xanthomonadales_68_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6682..7092)
DNA (411bp) protein (137aa)
hypothetical protein n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI000313AC48
hypothetical protein
Tax=RIFOXYA1_FULL_Xanthomonadales_68_6_curated
scnpilot_solids1_trim150_scaffold_1322_9
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7089..8318)
DNA (1230bp) protein (410aa)
NnrS family protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WPH6_PSEUU rbh
NnrS family protein; K07234 uncharacterized protein involved in response to NO rbh
NnrS family protein {ECO:0000313|EMBL:ADV26220.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_1322_10
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8629..10905)
DNA (2277bp) protein (759aa)
nitric-oxide reductase; K04561 nitric oxide reductase subunit B [EC:1.7.2.5] rbh
nitric oxide reductase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003047D08 rbh
Nitric oxide reductase large subunit {ECO:0000313|EMBL:AKC86351.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
scnpilot_solids1_trim150_scaffold_1322_11
unknown

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10962..11138
DNA (177bp) protein (59aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1322_12
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11867..12622)
DNA (756bp) protein (252aa)
transcriptional regulator n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002FEC27F rbh
Transcriptional regulator {ECO:0000313|EMBL:AKC86350.1}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
Crp/Fnr family transcriptional regulator; K01420 CRP/FNR family transcriptional regulator, anaerobic regulatory protein rbh
scnpilot_solids1_trim150_scaffold_1322_13
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12642..14039)
DNA (1398bp) protein (466aa)
oxygen-independent coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] rbh
Coproporphyrinogen-III oxidase {ECO:0000256|PIRNR:PIRNR000167}; EC=1.3.99.22 {ECO:0000256|PIRNR:PIRNR000167};; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
coproporphyrinogen III oxidase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002E97EBC rbh
Displaying 13 items

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