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scnpilot_solids1_trim150_scaffold_133_18

Organism: SCNPILOT_SOLID_1_TRIM150_Stenotrophomonas_70_20

near complete RP 51 / 55 MC: 4 BSCG 50 / 51 MC: 2 ASCG 12 / 38
Location: 14332..14910

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma24 factor n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FDD69F similarity UNIREF
DB: UNIREF100
  • Identity: 75.6
  • Coverage: 193.0
  • Bit_score: 287
  • Evalue 7.70e-75
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 75.6
  • Coverage: 193.0
  • Bit_score: 286
  • Evalue 7.00e-75
Strain LMCP11 contig_47, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21209.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.6
  • Coverage: 193.0
  • Bit_score: 286
  • Evalue 3.10e-74

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Taxonomy

Xanthomonas campestris → Xanthomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 579
ATGCTCGACGCCACCGTGACCGCCACCGCCCCTTTTCCGCAGGCTGCCGACGACGCCGCGCTGGCGCGTGCCGCCGCCGCTGGCGACAGCCATGCCTACGAGCGCATCTACCGCCGCCACGCCCCACGCCTGTACGCGCTGCTGTGGCGACTGTGCGGTGGCAGCGCGGCGCGCGCCGAGGACGCGCTGCAGGAGACCTTCATCCAGGCCTGGCGCAAGTTGCCGCAGTTCCGTTTCGAGAGCGCGCTGGGCACCTGGCTGCACCGCATGGCGGTGAACACGGCGCTGATGGAGCTGCGCGCCAGTGCCGCGTTCGAGGCGCTGGACATCGGCGAGGGCGGCATGCACGTGCTGGCGCAGATGCCGGCGTCCAGCCGCTGCCAGGCCACCGGGCTGGACCTGGAGCGCGCGCTGGAGACCCTGCCGCCGCGCGCCCGTGCGGTGCTGGTACTGCACGACATCGAGGGCTGGAAACACCACGAGATCGCCGAGGAACTGCAGATGGCCGTCGGCAGTTCCAAGGCACAGCTGCATCGCGCGCGCGGATTGTTGCGCGCGCGTCTGGGAGAAACACCATGA
PROTEIN sequence
Length: 193
MLDATVTATAPFPQAADDAALARAAAAGDSHAYERIYRRHAPRLYALLWRLCGGSAARAEDALQETFIQAWRKLPQFRFESALGTWLHRMAVNTALMELRASAAFEALDIGEGGMHVLAQMPASSRCQATGLDLERALETLPPRARAVLVLHDIEGWKHHEIAEELQMAVGSSKAQLHRARGLLRARLGETP*