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scnpilot_solids1_trim150_scaffold_133

Search features with annotation key words

Displaying items 1-30 of 210 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_133_1
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..703
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262B069
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KGE52676.1}; TaxID=325777 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. vasculorum.;"
scnpilot_solids1_trim150_scaffold_133_2
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(734..1639)
DNA (906bp) protein (302aa)
LysR family transcriptional regulator n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003118B89 rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:AHY59856.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
chromosome replication initiation inhibitor protein; K05596 LysR family transcriptional regulator, chromosome initiation inhibitor rbh
scnpilot_solids1_trim150_scaffold_133_3
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1765..2400
DNA (636bp) protein (212aa)
Transporter, lyse family n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8KZA2_9GAMM rbh
lysine exporter protein LysE/YggA; K06895 L-lysine exporter family protein LysE/ArgO rbh
Putative LysE family transmembrane transporter {ECO:0000313|EMBL:CAQ44794.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
scnpilot_solids1_trim150_scaffold_133_4
Alistipes sp. CAG:831, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2480..3697
DNA (1218bp) protein (406aa)
Uncharacterized protein n=1 Tax=Alistipes sp. CAG:831 RepID=R5HXW5_9BACT rbh
Uncharacterized protein {ECO:0000313|EMBL:CCY34530.1}; TaxID=1262698 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:831.;"
transmembrane transport protein
scnpilot_solids1_trim150_scaffold_133_5
Limnobacter sp. MED105, Limnobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3788..4078
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Limnobacter sp. MED105 RepID=A6GTV8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDM82355.1}; TaxID=391597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Limnobacter.;" source="Limnobacter sp. MED105.;"
scnpilot_solids1_trim150_scaffold_133_6
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4119..5195
DNA (1077bp) protein (359aa)
histidine kinase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002F6C8AE
Uncharacterized protein {ECO:0000313|EMBL:KGM57779.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
putative signal transduction protein
scnpilot_solids1_trim150_scaffold_133_7
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5220..6794)
DNA (1575bp) protein (525aa)
phospholipase n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002E93D7E rbh
Cardiolipin synthase {ECO:0000313|EMBL:AHY58182.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
phospholipase D/transphosphatidylase rbh
scnpilot_solids1_trim150_scaffold_133_8
Pseudomonas taeanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6909..8117
DNA (1209bp) protein (403aa)
Serine/threonine transporter SstT n=1 Tax=Pseudomonas mendocina EGD-AQ5 RepID=U1U2J9_PSEME
Serine/threonine transporter SstT {ECO:0000256|HAMAP-Rule:MF_01582, ECO:0000256|SAAS:SAAS00015301}; Na(+)/serine-threonine symporter {ECO:0000256|HAMAP-Rule:MF_01582}; TaxID=1395571 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas taeanensis MS-3.;"
serine/threonine transporter SstT; K07862 serine/threonine transporter
scnpilot_solids1_trim150_scaffold_133_9
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8120..8842
DNA (723bp) protein (241aa)
AzlC family protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWX1_9GAMM rbh
putative branched-chain amino acid permease (azaleucine resistance) rbh
Putative branched-chain amino acid permease (Azaleucine resistance) {ECO:0000313|EMBL:AGG89576.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_133_10
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8839..9144
DNA (306bp) protein (102aa)
Branched-chain amino acid transport protein (AzlD) n=1 Tax=Rhodanobacter denitrificans RepID=I4WWX0_9GAMM
Branched-chain amino acid transport protein (AzlD)
Branched-chain amino acid transport protein (AzlD) {ECO:0000313|EMBL:AGG89575.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_133_11
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9177..9887)
DNA (711bp) protein (237aa)
pseudouridylate synthase; K06182 23S rRNA pseudouridine2604 synthase [EC:5.4.99.21]
Pseudouridylate synthase, 16S rRNA uridine-516 n=1 Tax=Xanthomonas vesicatoria ATCC 35937 RepID=F0B8K4_9XANT
RNA-binding protein S4 {ECO:0000313|EMBL:KGM57777.1}; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
scnpilot_solids1_trim150_scaffold_133_12
RIFOXYA1_FULL_Xanthomonadales_69_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9884..10459)
DNA (576bp) protein (192aa)
metal-dependent hydrolase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B5DEAF
metal-dependent hydrolase; K07043
Tax=RIFOXYA1_FULL_Xanthomonadales_69_10_curated
scnpilot_solids1_trim150_scaffold_133_13
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10491..11048
DNA (558bp) protein (186aa)
nucleoprotein/polynucleotide-associated enzyme n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EB786E
Uncharacterized protein {ECO:0000313|EMBL:KGM53644.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein; K09912 hypothetical protein
scnpilot_solids1_trim150_scaffold_133_14
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11125..11391
DNA (267bp) protein (89aa)
hypothetical protein n=1 Tax=Xanthomonas RepID=UPI000262B0FC
Uncharacterized protein {ECO:0000313|EMBL:AJC45435.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
TraR/DksA family transcriptional regulator
scnpilot_solids1_trim150_scaffold_133_15

Not on your lists

comp(11480..11944)
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCG8_9BURK
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48364.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_133_16
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11993..13243)
DNA (1251bp) protein (417aa)
MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WCZ3_DELAC rbh
major facilitator superfamily protein; K08159 MFS transporter, DHA1 family, L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABX34841.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
scnpilot_solids1_trim150_scaffold_133_17
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13383..13964)
DNA (582bp) protein (194aa)
Small-conductance mechanosensitive channel n=2 Tax=Stenotrophomonas RepID=B8L6N5_9GAMM
Uncharacterized mscS family protein {ECO:0000313|EMBL:CCP12745.1}; TaxID=1118156 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia SKK35.;"
mechanosensitive ion channel MscS
scnpilot_solids1_trim150_scaffold_133_18
Xanthomonas campestris, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14332..14910
DNA (579bp) protein (193aa)
RNA polymerase sigma24 factor n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002FDD69F
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Strain LMCP11 contig_47, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21209.1}; TaxID=339 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas campestris.;"
scnpilot_solids1_trim150_scaffold_133_19
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14907..15443
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00030877F7
Uncharacterized protein {ECO:0000313|EMBL:AHY58191.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_133_20
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15456..16349
DNA (894bp) protein (298aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI000300594C rbh
Uncharacterized protein {ECO:0000313|EMBL:AHY58192.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_133_21
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16431..16763
DNA (333bp) protein (111aa)
hypothetical protein; K06193 phosphonoacetate hydrolase [EC:3.11.1.2]
Phosphonoacetate hydrolase n=1 Tax=Stenotrophomonas maltophilia MF89 RepID=T5KAJ4_STEMA
Phosphonoacetate hydrolase {ECO:0000313|EMBL:AHY58196.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
scnpilot_solids1_trim150_scaffold_133_22
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16791..17903)
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DE046E rbh
hypothetical protein rbh
Tetratricopeptide TPR_2 repeat-containing protein {ECO:0000313|EMBL:AEM52285.1}; Flags: Precursor;; TaxID=868597 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia JV3.;"
scnpilot_solids1_trim150_scaffold_133_23
Xanthomonas vesicatoria, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18201..18788
DNA (588bp) protein (196aa)
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-]
2''''-5'''' RNA ligase n=1 Tax=Xanthomonas sp. M97 RepID=UPI0003B322B6
2'-5' RNA ligase {ECO:0000313|EMBL:KHM93482.1}; TaxID=56460 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vesicatoria.;"
scnpilot_solids1_trim150_scaffold_133_24
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18892..19476
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002EFD690
Uncharacterized protein {ECO:0000313|EMBL:AHY58198.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_133_25
unknown

Not on your lists

comp(20142..20240)
DNA (99bp) protein (33aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_133_26
Stenotrophomonas rhizophila, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20292..20474
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Stenotrophomonas maltophilia (strain K279a) RepID=B2FPT7_STRMK
Uncharacterized protein {ECO:0000313|EMBL:AHY58199.1}; TaxID=216778 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas rhizophila.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_133_27
Xanthomonas hortorum, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20546..21916
DNA (1371bp) protein (457aa)
acid virulence protein B n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003744846 rbh
Virulence protein {ECO:0000313|EMBL:ETC88992.1}; TaxID=863365 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas hortorum pv. carotae str. M081.;"
type IV secretion system VirJ-like protein rbh
scnpilot_solids1_trim150_scaffold_133_28
Xanthomonas sacchari, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21882..24440)
DNA (2559bp) protein (853aa)
hypothetical protein; K14205 phosphatidylglycerol lysyltransferase [EC:2.3.2.3] rbh
membrane protein n=1 Tax=Xanthomonas sacchari RepID=UPI000262B10F rbh
Membrane protein {ECO:0000313|EMBL:AJC45417.1}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;"
scnpilot_solids1_trim150_scaffold_133_29
Stenotrophomonas sp. RIT309, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24653..25231
DNA (579bp) protein (193aa)
membrane protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003627166
Membrane protein {ECO:0000313|EMBL:EZP44162.1}; TaxID=1470590 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas.;" source="Stenotrophomonas sp. RIT309.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_133_30
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25282..25629
DNA (348bp) protein (116aa)
Putative translation initiation inhibitor, yjgF family n=1 Tax=Rhodanobacter denitrificans RepID=M4NEP9_9GAMM
putative translation initiation inhibitor, yjgF family
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:AGG89325.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Displaying items 1-30 of 210 in total

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