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scnpilot_solids1_trim150_scaffold_178_20

Organism: SCNPILOT_SOLID_1_TRIM150_Stenotrophomonas_70_20

near complete RP 51 / 55 MC: 4 BSCG 50 / 51 MC: 2 ASCG 12 / 38
Location: 18385..19803

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma54 factor n=1 Tax=Stenotrophomonas maltophilia RepID=UPI00031E2DC8 similarity UNIREF
DB: UNIREF100
  • Identity: 77.5
  • Coverage: 479.0
  • Bit_score: 714
  • Evalue 6.20e-203
  • rbh
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=56458 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas sacchari.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.5
  • Coverage: 486.0
  • Bit_score: 708
  • Evalue 4.80e-201
rpoN; RNA polymerase sigma-54 factor RpoN; K03092 RNA polymerase sigma-54 factor similarity KEGG
DB: KEGG
  • Identity: 76.6
  • Coverage: 478.0
  • Bit_score: 701
  • Evalue 1.70e-199
  • rbh

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Taxonomy

Xanthomonas sacchari → Xanthomonas → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1419
ATGAAAGCACGGCTGCAGACATCGCTTGGACAGCAACTGGTCATGACGCCACAGCTGCGCCAGGCCATCCGCCTGCTGCAGATGTCCAGCGCCGAACTGGAACTGGAACTGTCCGAGGCGGTGGAGAGCAACCCGCTGCTGGAATGGGCCGACGAGGCCGCGCCGGGCGAGCCGGCGGGCGAAGCGGATCCCCCCCCTGCGGTGGCCGATGCCGGCGACGGCCACGCCGACGAGGGCATGGAATGGCCCGGCGAAGGCGAGCAGTGGAGCGGCGGCCAGGGCGGCTCGTTCGACAACGACGACGGCGACGCCAGTGAACGCGTCGCCGAAGCCGATACCCTCGCCGACCACCTGCTGTGGCAGCTGCACCTGTCCCACCTGAGCGCGTGCGACCGCGCCATCGGCGTCGCCCTGATCGACGCGCTGGACGAGGACGGCTACCTGCGCGAACCGCTGGCATCCATCGCCGAAACGCTGCGCCCGGACATCGCCGCCGGCGAGGACGAGATCCTCACCGTGCTGCACCGGATCCAGCGTTTCGATCCGGCCGGCATCGGCGCCCGTACCCTGGGCGAATGCCTGGCGCTGCAGCTCGATGCCCTGCCCGCCGCCACGCCGGGCCTGTGCCTGGCCCGGCAGATCGCCGCGGGGCCGCTGGAGCGCCTGCCGCGGGCCGGCATCCCTGGCATCGCCGCCGAACTGCGGCAACCGGCCGAGGCCGTCGAACAGGCGGTGCAGCTGCTGCGCACGCTGGACCCGCGCCCGGGCCGGCAGCTGGGCGAAGTGTCCCCGGACACCTATGTCGTTCCTGACTGCGTGGTCTGGCGCCAGCGCGGCGTCTGGAAGGCCGCCCTCGCCAGCCATGCCGGCCCGCGGGTGGTGATCCACCGTGGCTACGAGCAGCTGATCCGCCGCTGCGGCGATGCCGACGCCAGTTACCTGCGCGGCCAGCTGCAGGAGGCGCGCTGGCTGCTCAAGGGCCTGGAAGCGCGCGGCGAGACCCTGCTGCGGGTGGTCAACAGCCTGCTGCACCACCAGGCCGGGTTCCTCGAGTTCGGCGCCCAGGCGCTGCGGCCGCTGACCCTGCGCGAGATCGCCGCCGAGCTGGACCTGCACGAATCCACCATCTCCCGCACCATCGCCCGCAAGCACGTGCGCACGCCGCGCGGCACCCTGCCGCTGCGCGCGTTCTTCGCCTCGGGCATCGATACCGATGGCGGCGGCGAGGCCTCCAGCACCGCGATCCAGTCGATGATCCGGCGCCTGATCGAAGCCGAGAACCCGCGCAAGCCGCTTTCTGACGCCAAGCTGGCCGACATGCTCAAGAGCAGCGGAATACCGGTGGCGCGCCGCACCGTGGCGAAGTATCGTGAAGCCATGAACATCTCCGCCTCCCACGAACGCGTACGCCTTGTCTGA
PROTEIN sequence
Length: 473
MKARLQTSLGQQLVMTPQLRQAIRLLQMSSAELELELSEAVESNPLLEWADEAAPGEPAGEADPPPAVADAGDGHADEGMEWPGEGEQWSGGQGGSFDNDDGDASERVAEADTLADHLLWQLHLSHLSACDRAIGVALIDALDEDGYLREPLASIAETLRPDIAAGEDEILTVLHRIQRFDPAGIGARTLGECLALQLDALPAATPGLCLARQIAAGPLERLPRAGIPGIAAELRQPAEAVEQAVQLLRTLDPRPGRQLGEVSPDTYVVPDCVVWRQRGVWKAALASHAGPRVVIHRGYEQLIRRCGDADASYLRGQLQEARWLLKGLEARGETLLRVVNSLLHHQAGFLEFGAQALRPLTLREIAAELDLHESTISRTIARKHVRTPRGTLPLRAFFASGIDTDGGGEASSTAIQSMIRRLIEAENPRKPLSDAKLADMLKSSGIPVARRTVAKYREAMNISASHERVRLV*