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scnpilot_solids1_trim150_scaffold_349

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_349_1
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..394
DNA (393bp) protein (131aa)
Putative nucleoside-diphosphate sugar epimerase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSL7_9GAMM
Putative nucleoside-diphosphate sugar epimerase {ECO:0000313|EMBL:EIL90208.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative nucleoside-diphosphate sugar epimerase
scnpilot_solids1_trim150_scaffold_349_2
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

395..1279
DNA (885bp) protein (295aa)
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
UDP-glucose pyrophosphorylase (EC:2.7.7.9)
UTP-glucose-1-phosphate uridylyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6X0_9GAMM
scnpilot_solids1_trim150_scaffold_349_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1348..2637
DNA (1290bp) protein (430aa)
FAD dependent oxidoreductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6X1_9GAMM
FAD dependent oxidoreductase {ECO:0000313|EMBL:EIL95212.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
glycine/D-amino acid oxidase, deaminating
scnpilot_solids1_trim150_scaffold_349_4
Arenimonas donghaensis, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2640..2990
DNA (351bp) protein (117aa)
tRNA-binding protein n=1 Tax=Dyella japonica RepID=UPI0002FD56D9
tRNA-binding protein {ECO:0000313|EMBL:KFL37940.1}; TaxID=1121014 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas donghaensis DSM 18148 = HO3-R19.;"
EMAP domain-containing protein
scnpilot_solids1_trim150_scaffold_349_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3126..4073)
DNA (948bp) protein (316aa)
Beta-lactamase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W6X3_9GAMM
Beta-lactamase {ECO:0000313|EMBL:EIL95214.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Zn-dependent hydrolase, glyoxylase
scnpilot_solids1_trim150_scaffold_349_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

4300..6321
DNA (2022bp) protein (674aa)
gamma-glutamyltransferase; K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltransferase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQB4_CHIPD
Gamma-glutamyltranspeptidase {ECO:0000313|EMBL:AHG87791.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
scnpilot_solids1_trim150_scaffold_349_7
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6398..8536)
DNA (2139bp) protein (713aa)
putative metalloendopeptidase; K07386 putative endopeptidase [EC:3.4.24.-]
Putative metalloendopeptidase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VN32_9GAMM
Putative metalloendopeptidase {ECO:0000313|EMBL:EIL88623.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
scnpilot_solids1_trim150_scaffold_349_8
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9231..12092
DNA (2862bp) protein (954aa)
Outer membrane cobalamin receptor protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WWB0_9GAMM
outer membrane cobalamin receptor protein
Outer membrane cobalamin receptor protein {ECO:0000313|EMBL:AGG90558.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_349_9
Mizugakiibacter sediminis, Mizugakiibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12140..13627
DNA (1488bp) protein (496aa)
peptidase M28 n=1 Tax=Dyella ginsengisoli RepID=UPI00034B1594
Peptidase M28 {ECO:0000313|EMBL:GAN45600.1}; TaxID=1475481 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Mizugakiibacter.;" source="Mizugakiibacter sediminis.;"
putative aminopeptidase
scnpilot_solids1_trim150_scaffold_349_10
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13882..14967
DNA (1086bp) protein (362aa)
Chorismate mutase, type II n=1 Tax=Holophaga foetida DSM 6591 RepID=H1P187_9BACT
Prephenate dehydrogenase {ECO:0000313|EMBL:KGM53524.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
prephenate dehydrogenase/chorismate mutase
scnpilot_solids1_trim150_scaffold_349_11
Arenimonas oryziterrae, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15047..16177)
DNA (1131bp) protein (377aa)
cystathionine gamma-synthase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B36B01
Cys/Met metabolism pyridoxal-phosphate-dependent protein
Uncharacterized protein {ECO:0000313|EMBL:KFN42469.1}; TaxID=1121015 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas oryziterrae DSM 21050 = YC6267.;"
scnpilot_solids1_trim150_scaffold_349_12
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16281..16832)
DNA (552bp) protein (184aa)
3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC:2.5.1.54)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUE0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03082.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_349_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17005..17760)
DNA (756bp) protein (252aa)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WRI0_9GAMM
methionine-S-sulfoxide reductase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_349_14
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17764..18366)
DNA (603bp) protein (201aa)
Methionine-R-sulfoxide reductase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJD3_9GAMM
Methionine-R-sulfoxide reductase {ECO:0000313|EMBL:EIL87324.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
methionine-R-sulfoxide reductase
scnpilot_solids1_trim150_scaffold_349_15
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18408..20129)
DNA (1722bp) protein (574aa)
Redoxin domain-containing protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJD4_9GAMM
Redoxin domain-containing protein {ECO:0000313|EMBL:EIL87325.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
cytochrome c biogenesis protein
scnpilot_solids1_trim150_scaffold_349_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20264..20920
DNA (657bp) protein (219aa)
RNA polymerase, sigma subunit, ECF family n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ99_9GAMM
RNA polymerase, sigma subunit, ECF family
RNA polymerase, sigma subunit, ECF family {ECO:0000313|EMBL:AGG89768.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_349_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20907..21578
DNA (672bp) protein (224aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NI39_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89767.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_349_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21893..22987
DNA (1095bp) protein (365aa)
Catalase-related peroxidase {ECO:0000256|PIRNR:PIRNR000296}; EC=1.11.1.- {ECO:0000256|PIRNR:PIRNR000296};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative chaperone protein; K03781 catalase [EC:1.11.1.6]
Catalase-related peroxidase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTG9_9GAMM
scnpilot_solids1_trim150_scaffold_349_19
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22984..23544
DNA (561bp) protein (187aa)
Putative cytochrome B561 n=1 Tax=Rhodanobacter sp. 115 RepID=I4WGF8_9GAMM
Putative cytochrome B561 {ECO:0000313|EMBL:EIL98549.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
putative [Ni] hydrogenase, b-type cytochrome subunit
scnpilot_solids1_trim150_scaffold_349_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23649..24854)
DNA (1206bp) protein (402aa)
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:EIL90478.1}; EC=2.3.1.9 {ECO:0000313|EMBL:EIL90478.1};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Acetyl-CoA acetyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTD7_9GAMM
acetyl-CoA acetyltransferase
scnpilot_solids1_trim150_scaffold_349_21
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25019..27406)
DNA (2388bp) protein (796aa)
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:AGG88907.1}; EC=1.1.1.35 {ECO:0000313|EMBL:AGG88907.1};; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3-hydroxyacyl-CoA dehydrogenase (EC:1.1.1.35)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WXM8_9GAMM
scnpilot_solids1_trim150_scaffold_349_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27463..28125)
DNA (663bp) protein (221aa)
Transcriptional regulator n=1 Tax=Rhodanobacter sp. 115 RepID=I4VRU8_9GAMM
Transcriptional regulator {ECO:0000313|EMBL:EIL89939.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_349_23
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28311..28736
DNA (426bp) protein (142aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
nucleoside diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WIC6_9GAMM
scnpilot_solids1_trim150_scaffold_349_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28769..29950
DNA (1182bp) protein (394aa)
23S rRNA m(2)A-2503 methyltransferase (EC:2.1.1.-)
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Rhodanobacter denitrificans RepID=I4WXN1_9GAMM
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_349_25
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29940..30731
DNA (792bp) protein (264aa)
Type IV pilus biogenesis/stability protein PilW n=1 Tax=Rhodanobacter denitrificans RepID=I4WXN2_9GAMM
type IV pilus biogenesis/stability protein PilW
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_349_26
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30728..31762
DNA (1035bp) protein (345aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX36_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL91777.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_349_27
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31939..32607
DNA (669bp) protein (223aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTD0_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL90471.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_349_28
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32604..33821
DNA (1218bp) protein (406aa)
Outer membrane protein assembly factor BamB n=1 Tax=Rhodanobacter denitrificans RepID=M4NDQ2_9GAMM
Beta-barrel assembly machine subunit BamB
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_349_29
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34010..35413
DNA (1404bp) protein (468aa)
GTPase Der n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VTC8_9GAMM
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
ribosome-associated GTPase EngA
scnpilot_solids1_trim150_scaffold_349_30
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35511..36380
DNA (870bp) protein (290aa)
5,10-methylene-tetrahydrofolate dehydrogenase/methenyl tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VX41_9GAMM
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Displaying items 1-30 of 35 in total

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