ggKbase home page

scnpilot_solids1_trim150_scaffold_597

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_597_1
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37..840
DNA (804bp) protein (268aa)
LigB family dioxygenase {ECO:0000313|EMBL:EXI89847.1}; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
extradiol ring-cleavage dioxygenase class III protein subunit B id=5082900 bin=GWF1_Burkholderiales_GWF1_66_17 species=Thauera phenylacetica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
extradiol ring-cleavage dioxygenase class III protein subunit B
scnpilot_solids1_trim150_scaffold_597_2
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

855..1487
DNA (633bp) protein (211aa)
Phospholipase/Carboxylesterase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y184_LEPCP
phospholipase/carboxylesterase; K06999 phospholipase/carboxylesterase
Phospholipase/Carboxylesterase {ECO:0000313|EMBL:ACB33061.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
scnpilot_solids1_trim150_scaffold_597_3
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2285..2893)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Chryseobacterium taeanense RepID=UPI000380F21B
NAD-dependent DNA ligase
NAD-dependent DNA ligase {ECO:0000313|EMBL:AEF91561.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
scnpilot_solids1_trim150_scaffold_597_4
unknown

Not on your lists

comp(3178..3540)
DNA (363bp) protein (121aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_597_5
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3537..4067)
DNA (531bp) protein (177aa)
Putative transcriptional regulator n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8YVX6_9GAMM
XRE family transcriptional regulator
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
scnpilot_solids1_trim150_scaffold_597_6
unknown

Not on your lists

comp(4030..4473)
DNA (444bp) protein (148aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_597_7
CG_Beta_01, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4847..5104
DNA (258bp) protein (86aa)
nuclease n=1 Tax=Methyloversatilis universalis RepID=UPI00036021DD
SNase-like protein
Tax=CG_Beta_01
scnpilot_solids1_trim150_scaffold_597_8
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5274..6302
DNA (1029bp) protein (343aa)
XRE family transcriptional regulator n=1 Tax=Acetobacter aceti RepID=UPI0002260C5F
Putative Plasmid maintenance system antidote protein, XRE family {ECO:0000313|EMBL:CDW92878.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
XRE family plasmid maintenance system antidote protein
scnpilot_solids1_trim150_scaffold_597_9
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6312..6797
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Candidatus Hamiltonella defensa RepID=UPI000373B265
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBS85469.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
scnpilot_solids1_trim150_scaffold_597_10
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6875..7213)
DNA (339bp) protein (113aa)
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_solids1_trim150_scaffold_597_11
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7200..15734)
DNA (8535bp) protein (2845aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TVQ1_ALIDB rbh
Uncharacterized protein {ECO:0000313|EMBL:KJA11287.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_597_12
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15832..18057)
DNA (2226bp) protein (742aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TMW5_ACIAC
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_solids1_trim150_scaffold_597_13
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18076..18735)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T1V1_ACIDE
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_solids1_trim150_scaffold_597_14
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18741..19094)
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036B91C2
Uncharacterized protein {ECO:0000313|EMBL:KJA11296.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
scnpilot_solids1_trim150_scaffold_597_15
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19175..19576)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00035E206F
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_solids1_trim150_scaffold_597_16
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19643..20743)
DNA (1101bp) protein (367aa)
Conserved hypothetical genomic island protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T1U8_ACIDE rbh
Uncharacterized protein {ECO:0000313|EMBL:KJA11298.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_597_17
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20913..21899)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T1U7_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:KJA11299.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
scnpilot_solids1_trim150_scaffold_597_18
unknown

Not on your lists

comp(21931..22107)
DNA (177bp) protein (59aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_597_19
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22118..24229)
DNA (2112bp) protein (704aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI000375A28E rbh
Genomic island protein {ECO:0000313|EMBL:KJA11300.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
genomic island protein rbh
scnpilot_solids1_trim150_scaffold_597_20
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24226..25734)
DNA (1509bp) protein (503aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. 3_1_syn3 RepID=D9YHP0_9DELT rbh
Terminase B protein {ECO:0000313|EMBL:AIY40169.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
putative phage terminase large subunit rbh
scnpilot_solids1_trim150_scaffold_597_21
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25706..26353)
DNA (648bp) protein (216aa)
hypothetical protein n=1 Tax=Chryseobacterium taeanense RepID=UPI0002E6A3A3
Uncharacterized protein {ECO:0000313|EMBL:EPD41122.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_597_22
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26407..26961)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Pseudomonas sp. 313 RepID=UPI0002DE7D8D
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_solids1_trim150_scaffold_597_23
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26979..27515)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Comamonas sp. B-9 RepID=UPI000395D318
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:AEF89690.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
scnpilot_solids1_trim150_scaffold_597_24
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27537..28241)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WHH6_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD39183.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
DNA replication protein DnaC, putative
scnpilot_solids1_trim150_scaffold_597_25
unknown

Not on your lists

comp(29221..29874)
DNA (654bp) protein (218aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_597_26
unknown

Not on your lists

comp(29871..30173)
DNA (303bp) protein (101aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_597_27
unknown

Not on your lists

30270..30452
DNA (183bp) protein (61aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_597_28
unknown

Not on your lists

comp(30615..30812)
DNA (198bp) protein (66aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_597_29
Burkholderia pseudomallei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30805..31026)
DNA (222bp) protein (74aa)
Uncharacterized protein n=2 Tax=Burkholderia pseudomallei RepID=A4LE08_BURPE
putative repressor Cro
Uncharacterized protein {ECO:0000313|EMBL:EBA51471.1}; TaxID=425067 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; pseudomallei group.;" source="Burkholderia pseudomallei 305.;"
scnpilot_solids1_trim150_scaffold_597_30
Pseudomonas chlororaphis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31205..31891
DNA (687bp) protein (229aa)
DNA binding domain/peptidase S24 domain phage protein n=1 Tax=Pseudomonas chlororaphis O6 RepID=I4XR41_9PSED
Peptidase S24 {ECO:0000313|EMBL:AIC18578.1}; TaxID=587753 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas chlororaphis.;"
repressor protein CI
Displaying items 1-30 of 42 in total

View Taxonomy