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scnpilot_solids1_trim150_scaffold_820

Search features with annotation key words

Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_820_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..225
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTI7_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00461.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_820_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

326..781
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTI6_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO21817.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_solids1_trim150_scaffold_820_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

857..2164
DNA (1308bp) protein (436aa)
Heavy metal RND efflux outer membrane protein, CzcC family n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9S2_ALIDK
heavy metal RND efflux outer membrane protein, CzcC family
Heavy metal RND efflux outer membrane protein, CzcC family {ECO:0000313|EMBL:AEB84572.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_solids1_trim150_scaffold_820_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2179..3699
DNA (1521bp) protein (507aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9S3_ALIDK rbh
RND family efflux transporter MFP subunit {ECO:0000313|EMBL:GAO21819.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
RND family efflux transporter MFP subunit; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB rbh
scnpilot_solids1_trim150_scaffold_820_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3696..6815
DNA (3120bp) protein (1040aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTI3_ALIDB rbh
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:ADV00457.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
heavy metal efflux pump, czca family; K07787 Cu(I)/Ag(I) efflux system membrane protein CusA rbh
scnpilot_solids1_trim150_scaffold_820_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7027..7941
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BPW9_DELAS rbh
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO21041.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
LysR family transcriptional regulator rbh
scnpilot_solids1_trim150_scaffold_820_7
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7968..8195
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIJ6_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM34934.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_820_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8413..10422
DNA (2010bp) protein (670aa)
TRAG family protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BTS5_DELAS
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:GAO26443.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
scnpilot_solids1_trim150_scaffold_820_9
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10419..10874
DNA (456bp) protein (152aa)
CopG domain protein DNA-binding domain protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIJ4_ACIET
copg domain-containing protein DNA-binding domain-containing protein
CopG domain protein DNA-binding domain protein {ECO:0000313|EMBL:ACM34932.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_820_10
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10871..11917
DNA (1047bp) protein (349aa)
p-type conjugative transfer atpase trbb n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EML9_9BURK
Conjugal transfer protein TrbB {ECO:0000313|EMBL:AIJ47392.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
scnpilot_solids1_trim150_scaffold_820_11
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11914..12300
DNA (387bp) protein (129aa)
TrbC-like protein n=1 Tax=Pseudomonas aeruginosa BWHPSA007 RepID=U9P3Q5_PSEAI
Conjugal transfer protein TrbC {ECO:0000313|EMBL:KIL06313.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
conjugal transfer protein trbc; K03197 type IV secretion system protein VirB2
scnpilot_solids1_trim150_scaffold_820_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12297..12581
DNA (285bp) protein (95aa)
Type IV secretion system protein VirB3 n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2XA61_DELAC
Type IV secretion system protein VirB3 {ECO:0000313|EMBL:EPD42107.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
putative conjugal transfer TrbD transmembrane protein; K03198 type IV secretion system protein VirB3
scnpilot_solids1_trim150_scaffold_820_13
Cupriavidus oxalaticus, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12604..15081
DNA (2478bp) protein (826aa)
Putative mating pair formation protein n=1 Tax=Cupriavidus oxalaticus RepID=Q84EN1_9BURK rbh
Putative mating pair formation protein {ECO:0000313|EMBL:CAD61153.1}; TaxID=96344 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus oxalaticus.;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
scnpilot_solids1_trim150_scaffold_820_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15078..15833
DNA (756bp) protein (252aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Pseudomonas aeruginosa BWHPSA007 RepID=U9P5D9_PSEAI
conjugal transfer protein TrbJ
P-type conjugative transfer protein TrbJ {ECO:0000313|EMBL:ABX35333.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
scnpilot_solids1_trim150_scaffold_820_15
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15846..17207
DNA (1362bp) protein (454aa)
conjugal transfer protein TrbL n=1 Tax=Pseudomonas aeruginosa RepID=UPI0003103086 rbh
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:AKC05778.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
conjugal transfer protein TrbL
scnpilot_solids1_trim150_scaffold_820_16
Cupriavidus oxalaticus, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17240..17944
DNA (705bp) protein (235aa)
conjugal transfer protein Trbf; K03200 type IV secretion system protein VirB5 id=12550367 bin=BDI species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria rbh
Putative mating pair formation protein {ECO:0000313|EMBL:CAD61157.1}; TaxID=96344 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus oxalaticus.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
scnpilot_solids1_trim150_scaffold_820_17
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17941..18954
DNA (1014bp) protein (338aa)
P-type conjugative transfer protein TrbG n=1 Tax=Pseudomonas aeruginosa BWHPSA007 RepID=U9P833_PSEAI
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:KIN89055.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
scnpilot_solids1_trim150_scaffold_820_18
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18957..20240
DNA (1284bp) protein (428aa)
conjugative transfer protein TrbI n=1 Tax=Pseudomonas aeruginosa RepID=UPI00030BCCBA rbh
Type IV secretion system protein virB10 {ECO:0000313|EMBL:AKC05781.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
scnpilot_solids1_trim150_scaffold_820_19
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20237..20458
DNA (222bp) protein (74aa)
Conjugal transfer protein n=1 Tax=Pseudomonas aeruginosa (strain PA7) RepID=A6V7L5_PSEA7
conjugal transfer protein
Conjugal transfer protein {ECO:0000313|EMBL:ABR84609.1}; TaxID=381754 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa (strain PA7).;"
scnpilot_solids1_trim150_scaffold_820_20
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20977..21882
DNA (906bp) protein (302aa)
cysM; cysteine synthase b; K12339 cysteine synthase B [EC:2.5.1.47] rbh
Cysteine synthase {ECO:0000256|RuleBase:RU003985}; EC=2.5.1.47 {ECO:0000256|RuleBase:RU003985};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Cysteine synthase B n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCB8_ACIET rbh
scnpilot_solids1_trim150_scaffold_820_21
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21888..22457
DNA (570bp) protein (190aa)
NUDIX hydrolase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCB7_ACIET rbh
nudix hydrolase rbh
NUDIX hydrolase {ECO:0000313|EMBL:ACM33822.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_820_22
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22454..22681
DNA (228bp) protein (76aa)
response regulator SirA n=1 Tax=Curvibacter lanceolatus RepID=UPI000374CEBE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG94258.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
scnpilot_solids1_trim150_scaffold_820_23
unknown

Not on your lists

comp(22763..23038)
DNA (276bp) protein (92aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_820_24
unknown

Not on your lists

comp(23035..23250)
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_820_25
unknown

Not on your lists

comp(23247..23615)
DNA (369bp) protein (123aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_820_26
unknown

Not on your lists

comp(23612..23818)
DNA (207bp) protein (69aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_820_27
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23835..24449)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MJI7_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM33325.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_820_28
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24846..27740
DNA (2895bp) protein (965aa)
histidine kinase n=1 Tax=Acidovorax radicis RepID=UPI0002376D60 rbh
Signal transduction histidine kinase {ECO:0000313|EMBL:EJE48459.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
multi-sensor hybrid histidine kinase
scnpilot_solids1_trim150_scaffold_820_29
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27737..28975
DNA (1239bp) protein (413aa)
EAL domain-containing protein n=1 Tax=Acidovorax sp. CF316 RepID=J0K2A5_9BURK rbh
EAL domain-containing protein {ECO:0000313|EMBL:EJE48460.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
response regulator receiver modulated diguanylate phosphodiesterase
scnpilot_solids1_trim150_scaffold_820_30
Cupriavidus sp. HMR-1, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29454..30065
DNA (612bp) protein (204aa)
LemA family protein n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EHS3_9BURK rbh
LemA family protein {ECO:0000313|EMBL:EKZ98478.1}; TaxID=1249621 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. HMR-1.;"
LemA family protein; K03744 LemA protein rbh
Displaying items 1-30 of 51 in total

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