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scnpilot_solids1_trim150_scaffold_3107

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_3107_1
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..762)
DNA (762bp) protein (254aa)
Nitrogen metabolism transcriptional regulator, NtrC, Fis family n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SHJ0_METPP
Nitrogen metabolism transcriptional regulator NtrC {ECO:0000313|EMBL:KDB54142.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
nitrogen metabolism transcriptional regulator NtrC; K07712 two-component system, NtrC family, nitrogen regulation response regulator GlnG
scnpilot_solids1_trim150_scaffold_3107_2
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(762..1853)
DNA (1092bp) protein (364aa)
ntrB; signal transduction histidine kinase, nitrogen specific, NtrB (EC:2.7.13.3); K07708 two-component system, NtrC family, nitrogen regulation sensor histidine kinase GlnL [EC:2.7.13.3] rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
Signal transduction histidine kinase, nitrogen specific, NtrB n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HP43_RUBGI rbh
scnpilot_solids1_trim150_scaffold_3107_3
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1884..2720)
DNA (837bp) protein (279aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
diaminopimelate epimerase (EC:5.1.1.7) rbh
Diaminopimelate epimerase n=1 Tax=Roseburia sp. CAG:197 RepID=R5YLF2_9FIRM rbh
scnpilot_solids1_trim150_scaffold_3107_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2736..4151)
DNA (1416bp) protein (472aa)
glutamine synthetase; K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
glutamine synthetase n=1 Tax=Caldimonas manganoxidans RepID=UPI00036552DA
scnpilot_solids1_trim150_scaffold_3107_5
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4458..6557
DNA (2100bp) protein (700aa)
3-hydroxybutyryl-CoA epimerase (EC:5.1.2.3); K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
3-hydroxyacyl-CoA dehydrogenase NAD-binding n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T2P5_ACIDE
3-hydroxyacyl-CoA dehydrogenase NAD-binding {ECO:0000313|EMBL:EER61228.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
scnpilot_solids1_trim150_scaffold_3107_6
unknown

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comp(6536..6994)
DNA (459bp) protein (153aa)
Putative uncharacterized protein id=2989062 bin=GWF1_Xanthomonadales_69_6 species=Burkholderia ambifaria genus=Burkholderia taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
scnpilot_solids1_trim150_scaffold_3107_7
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7016..7696
DNA (681bp) protein (227aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9)
acetyl-CoA acetyltransferase n=1 Tax=Acidovorax radicis RepID=UPI0002375FDB
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:KJA10415.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
scnpilot_solids1_trim150_scaffold_3107_8
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7602..8483)
DNA (882bp) protein (294aa)
Transcriptional regulator, IclR family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WLJ4_VEREI
hypothetical protein
Transcriptional regulator, IclR family {ECO:0000313|EMBL:ABM58501.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
scnpilot_solids1_trim150_scaffold_3107_9
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8608..9228
DNA (621bp) protein (207aa)
Glutathione S-transferase domain protein id=1274618 bin=GWE1_Burkholderiales_65_30 species=unknown genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
glutathione S-transferase
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
scnpilot_solids1_trim150_scaffold_3107_10
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9251..10423
DNA (1173bp) protein (391aa)
acyl-CoA dehydrogenase domain-containing protein; K00252 glutaryl-CoA dehydrogenase [EC:1.3.99.7]
Acyl-CoA dehydrogenase domain protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VLC1_POLNA
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ABM36449.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
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