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scnpilot_solids1_trim150_scaffold_5285

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_5285_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..503)
DNA (501bp) protein (167aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Acidovorax sp. (strain JS42) RepID=TTCA_ACISJ
C32 tRNA thiolase; K14058 tRNA 2-thiocytidine biosynthesis protein TtcA
tRNA 2-thiocytidine biosynthesis protein TtcA {ECO:0000255|HAMAP-Rule:MF_01850}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids1_trim150_scaffold_5285_2
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(509..1276)
DNA (768bp) protein (256aa)
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25]
Dihydroneopterin aldolase n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KNS4_9BURK rbh
Dihydroneopterin aldolase {ECO:0000313|EMBL:EGI78571.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
scnpilot_solids1_trim150_scaffold_5285_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1273..2067)
DNA (795bp) protein (265aa)
Short-chain dehydrogenase/reductase SDR n=2 Tax=Alicycliphilus denitrificans RepID=E8TX95_ALIDB
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:AEB82975.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_solids1_trim150_scaffold_5285_4
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2145..2861)
DNA (717bp) protein (239aa)
ABC transporter (EC:3.6.3.-); K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter family protein 46 {ECO:0000313|EMBL:ADP16452.1}; EC=3.6.3.- {ECO:0000313|EMBL:ADP16452.1};; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
hypothetical protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI000300A902
scnpilot_solids1_trim150_scaffold_5285_5
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2858..3121)
DNA (264bp) protein (88aa)
ABC transporter (EC:3.6.3.-); K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter family protein 47 {ECO:0000313|EMBL:ADP16453.1}; EC=3.6.3.- {ECO:0000313|EMBL:ADP16453.1};; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
ABC transporter n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0003146421
scnpilot_solids1_trim150_scaffold_5285_6
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3118..3522)
DNA (405bp) protein (135aa)
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QHC1_NITHX
ABC transporter
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family {ECO:0000313|EMBL:ABE64376.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids1_trim150_scaffold_5285_7
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3519..4466)
DNA (948bp) protein (316aa)
Putative high-affinity branched-chain amino acid transporter membrane protein n=2 Tax=Bordetella bronchiseptica RepID=K0MFP8_BORBM
Branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:KGD90088.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
high-affinity branched-chain amino acid transporter membrane protein
scnpilot_solids1_trim150_scaffold_5285_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4463..5326)
DNA (864bp) protein (288aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002FA8A3C rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS28638.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
inner-membrane translocator rbh
scnpilot_solids1_trim150_scaffold_5285_9
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5370..6581)
DNA (1212bp) protein (404aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Herbaspirillum sp. JC206 RepID=UPI0002DA23E5 rbh
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGD90086.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
branched-chain amino acid ABC transporter substrate-binding protein rbh
scnpilot_solids1_trim150_scaffold_5285_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6731..7780
DNA (1050bp) protein (350aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TX96_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU98364.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_5285_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7786..7980
DNA (195bp) protein (65aa)
UPI0003D3C645 related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D3C645
Uncharacterized protein {ECO:0000313|EMBL:GAD22792.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_5285_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8060..8500
DNA (441bp) protein (147aa)
thioredoxin; K03672 thioredoxin 2 [EC:1.8.1.8]
thioredoxin n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000369F4BF
Thioredoxin {ECO:0000313|EMBL:GAD20245.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_solids1_trim150_scaffold_5285_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8472..10046)
DNA (1575bp) protein (525aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D508E
Multifunctional CCA protein {ECO:0000256|HAMAP-Rule:MF_01261}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
polynucleotide adenylyltransferase/metal dependent phosphohydrolase
scnpilot_solids1_trim150_scaffold_5285_14
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10274..10792)
DNA (519bp) protein (173aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
5-formyltetrahydrofolate cyclo-ligase n=2 Tax=Acidovorax RepID=A1W3D3_ACISJ
5-formyltetrahydrofolate cyclo-ligase
scnpilot_solids1_trim150_scaffold_5285_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10896..11726
DNA (831bp) protein (277aa)
lytic transglycosylase catalytic; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-]
Lytic transglycosylase catalytic n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXB1_ALIDB
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ADU98379.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying 15 items

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