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scnpilot_solids1_trim150_scaffold_1851

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1851_1
Pseudomonas sp. MT-1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..223
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F901B8
MOSC domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:BAP79452.1}; TaxID=150396 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. MT-1.;"
scnpilot_solids1_trim150_scaffold_1851_2
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

251..751
DNA (501bp) protein (167aa)
uncharacterized protein ydhO-like
NLP/P60 protein id=5081532 bin=GWF1_Burkholderiales_GWF1_66_17 species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_solids1_trim150_scaffold_1851_3
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(761..1306)
DNA (546bp) protein (182aa)
Lipid A deacylase {ECO:0000256|PIRNR:PIRNR029681}; EC=3.1.1.77 {ECO:0000256|PIRNR:PIRNR029681};; LPS 3-O-deacylase {ECO:0000256|PIRNR:PIRNR029681}; Outer membrane enzyme {ECO:0000256|PIRNR:PIRNR029681}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
Lipid A deacylase n=1 Tax=Acidovorax sp. CF316 RepID=J0KC41_9BURK
lipid A 3-O-deacylase-like protein
scnpilot_solids1_trim150_scaffold_1851_4
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1390..1917)
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HXK1_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU43789.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_solids1_trim150_scaffold_1851_5
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2625..2882
DNA (258bp) protein (86aa)
Putative exonuclease, RdgC n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W1Y9_ACISJ
rdgC; recombination associated protein; K03554 recombination associated protein RdgC
Putative exonuclease, RdgC {ECO:0000313|EMBL:ABM40264.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_solids1_trim150_scaffold_1851_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2887..4140
DNA (1254bp) protein (418aa)
Nucleoside recognition domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRA8_ALIDB
nucleoside recognition domain protein
Nucleoside recognition domain protein {ECO:0000313|EMBL:ADU97819.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_1851_7
unknown

Not on your lists

comp(3983..4684)
DNA (702bp) protein (234aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1851_8
BJP_08E140C01_10KDA_Burkholderiales_65_51, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4739..6073)
DNA (1335bp) protein (445aa)
pyridine nucleotide-disulfide oxidoreductase dimerisation region; K00383 glutathione reductase (NADPH) [EC:1.8.1.7] rbh
glutathione reductase n=1 Tax=Comamonas sp. B-9 RepID=UPI000395872A
Tax=BJP_08E140C01_10KDA_Burkholderiales_65_51
scnpilot_solids1_trim150_scaffold_1851_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6398..6766
DNA (369bp) protein (123aa)
C4-dicarboxylate ABC transporter substrate-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037E84F1
TRAP-type C4-dicarboxylate transport system, periplasmic component {ECO:0000313|EMBL:GAD23822.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
TRAP dicarboxylate transporter subunit DctP
scnpilot_solids1_trim150_scaffold_1851_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6807..7367
DNA (561bp) protein (187aa)
C4-dicarboxylate ABC transporter substrate-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037E84F1
TRAP-type C4-dicarboxylate transport system, periplasmic component {ECO:0000313|EMBL:GAD23822.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
TRAP dicarboxylate transporter subunit DctP
scnpilot_solids1_trim150_scaffold_1851_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7424..7930
DNA (507bp) protein (169aa)
C4-dicarboxylate ABC transporter substrate-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000375D1C8
Tripartite ATP-independent periplasmic transporter, DctQ component {ECO:0000313|EMBL:GAD23823.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
transmembrane protein
scnpilot_solids1_trim150_scaffold_1851_12
Comamonas aquatica, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7923..9218
DNA (1296bp) protein (432aa)
C4-dicarboxylate ABC transporter permease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036177B7 rbh
C4-dicarboxylate ABC transporter permease {ECO:0000313|EMBL:EXU79109.1}; TaxID=1457173 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas aquatica DA1877.;"
TRAP dicarboxylate transporter subunit DctM
scnpilot_solids1_trim150_scaffold_1851_13
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9311..9868
DNA (558bp) protein (186aa)
hypothetical protein id=12550750 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_solids1_trim150_scaffold_1851_14
Oleispira antarctica, Oleispira, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10068..11039
DNA (972bp) protein (324aa)
NnrS family protein probable n=1 Tax=Oleispira antarctica RB-8 RepID=R4YPJ2_OLEAN
NnrS family protein probable {ECO:0000313|EMBL:CCK76952.1}; TaxID=698738 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oleispira.;" source="Oleispira antarctica RB-8.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1851_15
Bordetella holmesii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11129..12139
DNA (1011bp) protein (337aa)
ABC transporter periplasmic protein n=2 Tax=Bordetella holmesii RepID=M5NL22_9BORD
NMT1-like family protein {ECO:0000313|EMBL:AHV92281.1}; TaxID=1247649 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella holmesii ATCC 51541.;"
ABC transporter periplasmic protein; K02051 NitT/TauT family transport system substrate-binding protein
scnpilot_solids1_trim150_scaffold_1851_16
Marinomonas ushuaiensis, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12136..12981
DNA (846bp) protein (282aa)
Nitrate/sulfonate/bicarbonate ABC transporter permease n=1 Tax=Achromobacter piechaudii HLE RepID=J4Y4V7_9BURK
Nitrate ABC transporter permease {ECO:0000313|EMBL:ETX11872.1}; TaxID=1122207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas ushuaiensis DSM 15871.;"
binding-protein-dependent transport systems inner membrane component
scnpilot_solids1_trim150_scaffold_1851_17
Marinomonas ushuaiensis, Marinomonas, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12966..13697
DNA (732bp) protein (244aa)
ABC-type transport system, ATPase component n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6T3Y0_JANMA
ABC transporter {ECO:0000313|EMBL:ETX11873.1}; TaxID=1122207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Marinomonas.;" source="Marinomonas ushuaiensis DSM 15871.;"
ABC transporter ATPase; K02049 NitT/TauT family transport system ATP-binding protein
scnpilot_solids1_trim150_scaffold_1851_18
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13764..14285
DNA (522bp) protein (174aa)
hypothetical protein; K09004 hypothetical protein id=12497593 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
hypothetical protein; K09004 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAZ97006.1}; Flags: Precursor;; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids1_trim150_scaffold_1851_19
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14290..14628)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WAR2_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL96553.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_1851_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14849..15265
DNA (417bp) protein (139aa)
Putative membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J3CF22_9BURK
Putative membrane protein {ECO:0000313|EMBL:EJL70369.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K08972 putative membrane protein
scnpilot_solids1_trim150_scaffold_1851_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15276..17276)
DNA (2001bp) protein (667aa)
acetoacetyl-CoA synthase; K01907 acetoacetyl-CoA synthetase [EC:6.2.1.16]
Acetoacetyl-CoA synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8TS37_ALIDB
Acetoacetyl-CoA synthase {ECO:0000313|EMBL:ADU97875.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_solids1_trim150_scaffold_1851_22
unknown

Not on your lists

17468..17692
DNA (225bp) protein (75aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1851_23
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17889..18767)
DNA (879bp) protein (293aa)
Quinone oxidoreductase 2 n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AZV8_AZOBR
Uncharacterized protein {ECO:0000313|EMBL:KGG99938.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
qorB; quinone oxidoreductase 2
scnpilot_solids1_trim150_scaffold_1851_24
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18871..19227
DNA (357bp) protein (119aa)
Redox-sensing transcriptional regulator QorR n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6N8_PELHB
redox-sensing transcriptional regulator QorR
Redox-sensing transcriptional regulator QorR {ECO:0000313|EMBL:AEQ52200.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
scnpilot_solids1_trim150_scaffold_1851_25
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19178..19969)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Leeia oryzae RepID=UPI0003684456
LysR family transcriptional regulator {ECO:0000313|EMBL:KDB50297.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
LysR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_1851_26
Candidatus Accumulibacter sp. BA-93, Candidatus Accumulibacter, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20236..20427
DNA (192bp) protein (64aa)
Putative oxidoreductase MhqP {ECO:0000313|EMBL:EXI89848.1}; EC=1.-.-.- {ECO:0000313|EMBL:EXI89848.1};; TaxID=1454004 species="Bacteria; Proteobacteria; Betaproteobacteria; Candidatus Accumulibacter.;" source="Candidatus Accumulibacter sp. BA-93.;"
Uncharacterized protein n=1 Tax=Alishewanella jeotgali KCTC 22429 RepID=H3ZGF9_9ALTE
hypothetical protein
scnpilot_solids1_trim150_scaffold_1851_27
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20440..20889
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MC13_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM31933.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_solids1_trim150_scaffold_1851_28
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20945..21829
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMY0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62417.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids1_trim150_scaffold_1851_29
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21968..22351
DNA (384bp) protein (128aa)
Regulatory protein MarR n=2 Tax=Alicycliphilus denitrificans RepID=E8TX06_ALIDB
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:GAO25508.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_solids1_trim150_scaffold_1851_30
Brevibacterium linens, Brevibacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22467..22682)
DNA (216bp) protein (72aa)
enoyl-CoA hydratase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFEA5A
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:KHS50548.1}; TaxID=1703 species="Bacteria; Actinobacteria; Micrococcales; Brevibacteriaceae; Brevibacterium.;" source="Brevibacterium linens.;"
enoyl-CoA hydratase/carnithine racemase
Displaying 30 items

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