ggKbase home page

scnpilot_solids1_trim150_scaffold_441

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_441_1
Cellulomonas fimi, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..3690)
-----------------
DNA (3690bp)
protein (1230aa)
PKD domain containing protein n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4GYN8_CELFA rbh
PKD domain containing protein {ECO:0000313|EMBL:AEE47155.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;"
PKD domain-containing protein rbh
scnpilot_solids1_trim150_scaffold_441_2
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3756..4115)
-----------------
DNA (360bp)
protein (120aa)
hypothetical protein n=1 Tax=Microbacterium paraoxydans RepID=UPI0003794DE5
Contig_41, whole genome shotgun sequence {ECO:0000313|EMBL:KIP87990.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
scnpilot_solids1_trim150_scaffold_441_3
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4439..5581)
-----------------
DNA (1143bp)
protein (381aa)
Uncharacterized protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AEK4_9ACTN
Contig_41, whole genome shotgun sequence {ECO:0000313|EMBL:KIP87989.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_441_4
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5685..7058)
-----------------
DNA (1374bp)
protein (458aa)
Cell surface polysaccharide biosynthesis / Chain length determinant protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AEK5_9ACTN
Contig_41, whole genome shotgun sequence {ECO:0000313|EMBL:KIP87988.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
ATPase
scnpilot_solids1_trim150_scaffold_441_5
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7135..8337)
-----------------
DNA (1203bp)
protein (401aa)
Uncharacterized protein n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AEK7_9ACTN
Contig_41, whole genome shotgun sequence {ECO:0000313|EMBL:KIP87987.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_441_6
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8334..9815)
-----------------
DNA (1482bp)
protein (494aa)
hypothetical protein n=1 Tax=Leucobacter salsicius RepID=UPI00034D5273 rbh
Uncharacterized protein {ECO:0000313|EMBL:EIZ83196.1}; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_441_7
Modestobacter sp. KNN45-2b, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10024..10779
-----------------
DNA (756bp)
protein (252aa)
hypothetical protein n=1 Tax=Leucobacter salsicius RepID=UPI000376E2C2 rbh
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:KGH43990.1}; TaxID=1522368 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter sp. KNN45-2b.;"
wcoE; putative phosphatidylglycerophosphate synthase
scnpilot_solids1_trim150_scaffold_441_8
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10925..11797
-----------------
DNA (873bp)
protein (291aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
dTDP-glucose pyrophosphorylase; K00973 glucose-1-phosphate thymidylyltransferase [EC:2.7.7.24] rbh
glucose-1-phosphate thymidylyltransferase n=1 Tax=Microbacterium barkeri RepID=UPI0003128C1B rbh
scnpilot_solids1_trim150_scaffold_441_9
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11794..12789
-----------------
DNA (996bp)
protein (332aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
rfbB; dTDP-D-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] rbh
dTDP-glucose 4,6-dehydratase n=1 Tax=Microbacterium laevaniformans OR221 RepID=H8E1J3_9MICO rbh
scnpilot_solids1_trim150_scaffold_441_10
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12732..14201
-----------------
DNA (1470bp)
protein (490aa)
Putative dTDP-4-dehydrorhamnose 3,5-epimerase {ECO:0000313|EMBL:KJL37252.1}; EC=5.1.3.13 {ECO:0000313|EMBL:KJL37252.1};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
dTDP-4-dehydrorhamnose reductase (EC:1.1.1.133); K00067 dTDP-4-dehydrorhamnose reductase [EC:1.1.1.133]; K01790 dTDP-4-dehydrorhamnose 3,5-epimerase [EC:5.1.3.13] rbh
dTDP-4-dehydrorhamnose reductase n=1 Tax=Microbacterium sp. oral taxon 186 str. F0373 RepID=S3ACA6_9MICO rbh
scnpilot_solids1_trim150_scaffold_441_11
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14513..14743
-----------------
DNA (231bp)
protein (77aa)
Uncharacterized protein {ECO:0000313|EMBL:KJQ52474.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
scnpilot_solids1_trim150_scaffold_441_12
Arthrobacter sp. PAMC25486, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14781..15008)
-----------------
DNA (228bp)
protein (76aa)
UPI0003D6C028 related cluster n=1 Tax=unknown RepID=UPI0003D6C028
Uncharacterized protein {ECO:0000313|EMBL:AIY00724.1}; TaxID=1494608 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter sp. PAMC25486.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_441_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15011..15490)
-----------------
DNA (480bp)
protein (160aa)
Uncharacterized protein n=1 Tax=Mycobacterium canettii CIPT 140070010 RepID=L0QIC6_9MYCO
Uncharacterized protein {ECO:0000313|EMBL:KFI70531.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_441_14
Mycobacterium tuberculosis, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15507..15824)
-----------------
DNA (318bp)
protein (106aa)
Uncharacterized protein n=1 Tax=Mycobacterium canettii CIPT 140070010 RepID=L0QIC6_9MYCO
Uncharacterized protein {ECO:0000313|EMBL:CRG22623.1}; TaxID=1773 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex.;" source="Mycobacterium tuberculosis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_441_15
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15917..17278)
-----------------
DNA (1362bp)
protein (454aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
glmM; phosphomannomutase; K03431 phosphoglucosamine mutase [EC:5.4.2.10]
Phosphoglucosamine mutase n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KFT4_9MICO rbh
scnpilot_solids1_trim150_scaffold_441_16
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(17296..17781)
-----------------
DNA (486bp)
protein (162aa)
30S ribosomal protein S9 n=1 Tax=Microbacterium barkeri RepID=UPI00030CA4AC
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
rpsI; ribosomal protein S9; K02996 small subunit ribosomal protein S9
scnpilot_solids1_trim150_scaffold_441_17
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(17811..18257)
-----------------
DNA (447bp)
protein (149aa)
50S ribosomal protein L13 n=2 Tax=Microbacterium RepID=H8E4T2_9MICO
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
rplM; 50S ribosomal protein L13
scnpilot_solids1_trim150_scaffold_441_18
unknown

Not on your lists

comp(18415..18645)
-----------------
DNA (231bp)
protein (77aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_441_19
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18678..19658
-----------------
DNA (981bp)
protein (327aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI0003662B13 rbh
Uncharacterized protein {ECO:0000313|EMBL:KJL29282.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_441_20
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20065..20733)
-----------------
DNA (669bp)
protein (223aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KR29_9MICO rbh
Contig_12, whole genome shotgun sequence {ECO:0000313|EMBL:KIP92697.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
exonuclease III rbh
scnpilot_solids1_trim150_scaffold_441_21
Microbacterium azadirachtae, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20771..21613)
-----------------
DNA (843bp)
protein (281aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=582680 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium azadirachtae.;"
truA; pseudouridylate synthase; K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034C8B03 rbh
scnpilot_solids1_trim150_scaffold_441_22
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21669..23516
-----------------
DNA (1848bp)
protein (616aa)
hypothetical protein n=1 Tax=Microbacterium sp. 292MF RepID=UPI000378F811 rbh
Putative acyltransferase {ECO:0000313|EMBL:GAD34978.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
yrhL; lipopolysaccharide modification acyltransferase rbh
scnpilot_solids1_trim150_scaffold_441_23
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23541..26873)
-----------------
DNA (3333bp)
protein (1111aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5K364_9MICO rbh
Chromosome partition protein Smc {ECO:0000313|EMBL:KJL18535.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_441_24
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(26870..27670)
-----------------
DNA (801bp)
protein (267aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003451A9E rbh
hypothetical protein
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
scnpilot_solids1_trim150_scaffold_441_25
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27663..29138)
-----------------
DNA (1476bp)
protein (492aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034644D1 rbh
Contig_16, whole genome shotgun sequence {ECO:0000313|EMBL:KIP91982.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_441_26
unknown

Not on your lists

comp(29201..29947)
-----------------
DNA (747bp)
protein (249aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_441_trna_2
unknown

Not on your lists

comp(29870..29943)
-----------------
DNA (74bp)
transferRNA Met
scnpilot_solids1_trim150_scaffold_441_trna_1
unknown

Not on your lists

comp(29974..30045)
-----------------
DNA (72bp)
transferRNA Thr
scnpilot_solids1_trim150_scaffold_441_27
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30113..31252)
-----------------
DNA (1140bp)
protein (380aa)
Murein DD-endopeptidase MepM {ECO:0000313|EMBL:KJQ55127.1}; EC=3.4.24.- {ECO:0000313|EMBL:KJQ55127.1};; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E18BAC rbh
hypothetical protein
scnpilot_solids1_trim150_scaffold_441_28
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(31519..32319)
-----------------
DNA (801bp)
protein (267aa)
archaeal fructose-1,6-bisphosphatase; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003459861 rbh
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
Displaying items 1-30 of 34 in total

View Taxonomy