ggKbase home page

scnpilot_solids1_trim150_scaffold_467

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_467_1
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(1..3747)
DNA (3747bp) protein (1249aa)
NHL repeat containing protein n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GHS3_METPE
NHL repeat containing protein
NHL repeat containing protein {ECO:0000313|EMBL:ACL16678.1}; Flags: Precursor;; TaxID=521011 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c).;"
scnpilot_solids1_trim150_scaffold_467_2
unknown

Not on your lists

comp(4034..5776)
DNA (1743bp) protein (581aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_467_trna_1
unknown

Not on your lists

comp(6066..6139)
DNA (74bp)
transferRNA Asp
scnpilot_solids1_trim150_scaffold_467_3
Microbispora sp. ATCC PTA-5024, Microbispora, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6189..6728)
DNA (540bp) protein (180aa)
hypothetical protein n=1 Tax=Nonomuraea coxensis RepID=UPI000376864A
Uncharacterized protein {ECO:0000313|EMBL:ETK37936.1}; Flags: Fragment;; TaxID=316330 species="Bacteria; Actinobacteria; Streptosporangiales; Streptosporangiaceae; Microbispora.;" source="Microbispora sp. ATCC PTA-5024.;"
putative MarR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_467_4
Streptomyces rubellomurinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6925..8508
DNA (1584bp) protein (528aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Catenulispora acidiphila (strain DSM 44928 / NRRL B-24433 / NBRC 102108 / JCM 14897) RepID=C7QHX3_CATAD rbh
Uncharacterized protein {ECO:0000313|EMBL:KJS60273.1}; TaxID=359131 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rubellomurinus.;"
EmrB/QacA subfamily drug resistance transporter rbh
scnpilot_solids1_trim150_scaffold_467_5
Alicyclobacillus acidocaldarius, Alicyclobacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

8663..9514
DNA (852bp) protein (284aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
5-carboxymethyl-2-hydroxymuconateDelta-isomerase {ECO:0000313|EMBL:ACV59890.1}; EC=5.3.3.10 {ECO:0000313|EMBL:ACV59890.1};; TaxID=521098 species="Bacteria; Firmicutes; Bacilli; Bacillales; Alicyclobacillaceae; Alicyclobacillus.;" source="Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC; 27009 / DSM 446 / JCM 5260 / NBRC 15652 / NCIMB 11725 / NRRL B-14509 /; 104-1A) (Bacillus acidocaldarius).;"
5-carboxymethyl-2-hydroxymuconateDelta-isomerase n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius (strain ATCC 27009 / DSM 446 / 104-1A) RepID=C8WV53_ALIAD
scnpilot_solids1_trim150_scaffold_467_6
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(9608..10828)
DNA (1221bp) protein (407aa)
Peptidoglycan-binding domain 1 protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FA93_CONWI rbh
peptidoglycan-binding protein rbh
Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:ADB49162.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids1_trim150_scaffold_467_7
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

10888..12114
DNA (1227bp) protein (409aa)
Polysaccharide deacetylase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3EZG8_CONWI
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ADB53806.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids1_trim150_scaffold_467_8
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

12311..13498
DNA (1188bp) protein (396aa)
cyclopropane-fatty-acyl-phospholipid synthase (EC:2.1.1.79); K00574 cyclopropane-fatty-acyl-phospholipid synthase [EC:2.1.1.79] rbh
Cyclopropane-fatty-acyl-phospholipid synthase {ECO:0000313|EMBL:ADB53135.1}; EC=2.1.1.79 {ECO:0000313|EMBL:ADB53135.1};; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
Cyclopropane-fatty-acyl-phospholipid synthase n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FA40_CONWI rbh
scnpilot_solids1_trim150_scaffold_467_9
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

13495..14373
DNA (879bp) protein (293aa)
Alpha/beta hydrolase n=1 Tax=Patulibacter medicamentivorans RepID=H0E8J2_9ACTN
Alpha/beta hydrolase {ECO:0000313|EMBL:EHN09992.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
2SCG18.11; hydrolase
scnpilot_solids1_trim150_scaffold_467_10
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

14370..15116
DNA (747bp) protein (249aa)
Beta-lactamase domain protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FCK9_CONWI
beta-lactamase
Beta-lactamase domain protein {ECO:0000313|EMBL:ADB49482.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids1_trim150_scaffold_467_11
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

Not on your lists

15245..16792
DNA (1548bp) protein (516aa)
cell division protein FtsH; K03798 cell division protease FtsH [EC:3.4.24.-]
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Propionibacterium acnes HL103PA1 RepID=F1U1D1_PROAA
Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
scnpilot_solids1_trim150_scaffold_467_12
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

17202..17645
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Patulibacter medicamentivorans RepID=H0E706_9ACTN
Uncharacterized protein {ECO:0000313|EMBL:EHN10501.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_467_13
unknown

Not on your lists

comp(17662..17880)
DNA (219bp) protein (73aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_467_14
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17968..18792)
DNA (825bp) protein (275aa)
Collagen triple helix repeat-containing protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TBC3_9CLOT
Collagen triple helix repeat-containing protein {ECO:0000313|EMBL:EGD48327.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
col25a1; collagen, type XXV, alpha 1
scnpilot_solids1_trim150_scaffold_467_15
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(18857..22975)
DNA (4119bp) protein (1373aa)
Uncharacterized protein n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FA23_CONWI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB53118.1}; Flags: Precursor;; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids1_trim150_scaffold_467_16
Mallada signata, Mallada, Neuroptera, Neoptera, Arthropoda, Metazoa

Not on your lists

comp(22975..25632)
DNA (2658bp) protein (886aa)
Cross-beta structure silk protein 1 n=1 Tax=Mallada signata RepID=C0LZW6_9NEOP
Cross-beta structure silk protein 1 {ECO:0000313|EMBL:ACN87361.1}; TaxID=417516 species="Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Neuroptera; Chrysopidae; Mallada.;" source="Mallada signata.;"
scnpilot_solids1_trim150_scaffold_467_17
unknown

Not on your lists

comp(25875..26477)
DNA (603bp) protein (201aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_467_18
unknown

Not on your lists

comp(26733..27737)
DNA (1005bp) protein (335aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_467_19
Conexibacter woesei, Conexibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

27944..29410
DNA (1467bp) protein (489aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577) RepID=D3FBN5_CONWI rbh
EmrB/QacA subfamily drug resistance transporter rbh
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:ADB49404.1}; TaxID=469383 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Conexibacteraceae; Conexibacter.;" source="Conexibacter woesei (strain DSM 14684 / JCM 11494 / NBRC 100937 /; ID131577).;"
scnpilot_solids1_trim150_scaffold_467_20
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29420..30025
DNA (606bp) protein (202aa)
Transcriptional regulator, TetR family n=1 Tax=Frankia sp. (strain EAN1pec) RepID=A8L0K6_FRASN
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABW14539.1}; TaxID=298653 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
scnpilot_solids1_trim150_scaffold_467_21
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(30038..30697)
DNA (660bp) protein (220aa)
DNA-binding response regulator n=1 Tax=Patulibacter medicamentivorans RepID=H0EB03_9ACTN
DNA-binding response regulator {ECO:0000313|EMBL:EHN09142.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
LuxR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_467_22
RHI_WWE3_38_15, WWE3, Bacteria

Not on your lists

30740..31921
DNA (1182bp) protein (394aa)
dcm; DNA (cytosine-5-)-methyltransferase (EC:2.1.1.37); K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37] rbh
DNA-cytosine methyltransferase n=1 Tax=Patulibacter americanus RepID=UPI0003B48C2B rbh
Tax=RIFCSPHIGHO2_12_FULL_WWE3_38_15_curated
scnpilot_solids1_trim150_scaffold_467_23
Rhodococcus triatomae, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31904..32353)
DNA (450bp) protein (150aa)
vsr; DNA mismatch endonuclease (EC:3.1.-.-); K07458 DNA mismatch endonuclease, patch repair protein [EC:3.1.-.-]
Very short patch repair protein n=1 Tax=Rhodococcus triatomae BKS 15-14 RepID=M2W9W7_9NOCA
Very short patch repair protein {ECO:0000313|EMBL:EME14427.1}; TaxID=1278078 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus triatomae BKS 15-14.;"
scnpilot_solids1_trim150_scaffold_467_24
Nocardia nova, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32350..32988)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Nocardia cyriacigeorgica (strain GUH-2) RepID=H6QYW5_NOCCG
Deazaflavin-dependent nitroreductase family protein {ECO:0000313|EMBL:AHH20551.1}; TaxID=1415166 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia nova SH22a.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_467_25
Patulibacter medicamentivorans, Patulibacter, Solirubrobacterales, Thermoleophilia, Actinobacteria, Bacteria

Not on your lists

comp(33049..33792)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Patulibacter medicamentivorans RepID=H0E4C5_9ACTN rbh
Uncharacterized protein {ECO:0000313|EMBL:EHN11470.1}; TaxID=1097667 species="Bacteria; Actinobacteria; Thermoleophilia; Solirubrobacterales; Patulibacteraceae; Patulibacter.;" source="Patulibacter medicamentivorans.;"
hypothetical protein
Displaying 26 items

View Taxonomy