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scnpilot_solids1_trim150_scaffold_603

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_603_1
unknown

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2..148
DNA (147bp) protein (49aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_603_trna_1
unknown

Not on your lists

comp(87..159)
DNA (73bp)
transferRNA Phe
scnpilot_solids1_trim150_scaffold_603_2
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(284..2548)
DNA (2265bp) protein (755aa)
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12]
ATP-dependent DNA helicase RecQ n=1 Tax=Niabella soli DSM 19437 RepID=H1NTX9_9SPHI
ATP-dependent DNA helicase RecQ {ECO:0000313|EMBL:AHF16167.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_solids1_trim150_scaffold_603_3
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

2772..3773
DNA (1002bp) protein (334aa)
KpsF/GutQ family protein; K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13]
KpsF/GutQ family protein {ECO:0000313|EMBL:AEW02632.1}; EC=5.3.1.13 {ECO:0000313|EMBL:AEW02632.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
KpsF/GutQ family protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TDZ8_NIAKG
scnpilot_solids1_trim150_scaffold_603_4
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3780..4868
DNA (1089bp) protein (363aa)
Mannose-1-phosphate guanylyltransferase {ECO:0000313|EMBL:AEW02634.1}; EC=2.7.7.13 {ECO:0000313|EMBL:AEW02634.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Mannose-1-phosphate guanylyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TE00_NIAKG
mannose-1-phosphate guanylyltransferase
scnpilot_solids1_trim150_scaffold_603_5
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

4869..6014
DNA (1146bp) protein (382aa)
2-keto-4-methylthiobutyrate aminotransferase; K14287 methionine aminotransferase [EC:2.6.1.-]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037B42A1
Aminotransferase {ECO:0000313|EMBL:KIC96380.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
scnpilot_solids1_trim150_scaffold_603_6
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


6223..7248
DNA (1026bp) protein (342aa)
recombinase RecA n=1 Tax=Segetibacter koreensis RepID=UPI0003759F0A
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
recombinase A; K03553 recombination protein RecA
scnpilot_solids1_trim150_scaffold_603_7
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(7323..9497)
DNA (2175bp) protein (725aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036B458C
phage shock protein C, PspC
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_603_8
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9535..9867)
DNA (333bp) protein (111aa)
Transcriptional regulator, PadR family n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TF30_NIAKG
PadR family transcriptional regulator {ECO:0000313|EMBL:GAL86682.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
transcriptional regulator, PadR family
scnpilot_solids1_trim150_scaffold_603_9
unknown

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10062..10169
DNA (108bp) protein (36aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_603_10
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

10181..10885
DNA (705bp) protein (235aa)
Ribosomal RNA small subunit methyltransferase E; K09761 16S rRNA (uracil1498-N3)-methyltransferase [EC:2.1.1.193]
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJS3_NIAKG
scnpilot_solids1_trim150_scaffold_603_11
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(10893..11609)
DNA (717bp) protein (239aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Niabella soli DSM 19437 RepID=H1NSK4_9SPHI
Putative two-component response regulator {ECO:0000313|EMBL:GAO45042.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
two component transcriptional regulator, winged helix family
scnpilot_solids1_trim150_scaffold_603_12
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12337..14229)
DNA (1893bp) protein (631aa)
ATP-dependent DNA helicase RecQ; K03654 ATP-dependent DNA helicase RecQ [EC:3.6.4.12] rbh
ATP-dependent DNA helicase, RecQ family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ71_CHIPD rbh
ATP-dependent DNA helicase, RecQ family {ECO:0000313|EMBL:ACU58760.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_603_13
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

14301..14720
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003698964
hypothetical protein; K06925 UPF0079 ATP-binding protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_603_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

14760..15974
DNA (1215bp) protein (405aa)
Alanine dehydrogenase; K00259 alanine dehydrogenase [EC:1.4.1.1]
Alanine dehydrogenase {ECO:0000313|EMBL:AEW03176.1}; EC=1.4.1.1 {ECO:0000313|EMBL:AEW03176.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Alanine dehydrogenase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP58_NIAKG
scnpilot_solids1_trim150_scaffold_603_15
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15975..18452)
DNA (2478bp) protein (826aa)
bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; K01775 alanine racemase [EC:5.1.1.1]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037AE4E5
Alanine racemase {ECO:0000313|EMBL:ACU57733.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_solids1_trim150_scaffold_603_16
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(18436..19377)
DNA (942bp) protein (314aa)
Integral membrane protein, TerC family n=1 Tax=Niabella soli DSM 19437 RepID=H1NQ58_9SPHI
Tellurium resistance protein TerC {ECO:0000313|EMBL:KIC89209.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
TerC family integral membrane protein; K05794 tellurite resistance protein TerC
scnpilot_solids1_trim150_scaffold_603_17
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19390..21087)
DNA (1698bp) protein (566aa)
Protein involved in gliding motility GldG n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJW7_NIAKG
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAO41666.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
gliding motility protein GldG
scnpilot_solids1_trim150_scaffold_603_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21094..21813)
DNA (720bp) protein (240aa)
Protein involved in gliding motility GldF n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJW8_NIAKG
gliding motility protein GldF
Protein involved in gliding motility GldF {ECO:0000313|EMBL:AEW01866.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_603_19
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

21920..22615
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000363B894
Uncharacterized protein {ECO:0000313|EMBL:KHJ38373.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_603_20
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22906..23826)
DNA (921bp) protein (307aa)
cobalt transporter n=1 Tax=Marinilabilia salmonicolor RepID=UPI00029A29E4 rbh
Cation diffusion facilitator family transporter {ECO:0000313|EMBL:EIJ39329.1}; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
cobalt transporter rbh
scnpilot_solids1_trim150_scaffold_603_21
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(23881..24327)
DNA (447bp) protein (149aa)
VanZ family protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQS9_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:AHF17753.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
VanZ like family protein
scnpilot_solids1_trim150_scaffold_603_22
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24278..24655)
DNA (378bp) protein (126aa)
Glycine cleavage system H protein n=1 Tax=Niabella soli DSM 19437 RepID=H1NQM7_9SPHI
Glycine cleavage system H protein {ECO:0000256|HAMAP-Rule:MF_00272}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
Glycine cleavage system H protein; K02437 glycine cleavage system H protein
scnpilot_solids1_trim150_scaffold_603_23
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24774..25127)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMJ3_NIAKG
Uncharacterized protein {ECO:0000313|EMBL:KIC96093.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_603_24
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25196..26467
DNA (1272bp) protein (424aa)
seryl-tRNA synthetase; K01875 seryl-tRNA synthetase [EC:6.1.1.11]
Seryl-tRNA synthetase {ECO:0000313|EMBL:ACU57716.1}; EC=6.1.1.11 {ECO:0000313|EMBL:ACU57716.1};; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Seryl-tRNA synthetase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PD93_CHIPD
scnpilot_solids1_trim150_scaffold_603_25
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(26522..27955)
DNA (1434bp) protein (478aa)
Glucosidase n=1 Tax=uncultured organism RepID=H9CTG4_9ZZZZ
Beta-D-glucoside glucohydrolase {ECO:0000313|EMBL:AKD05695.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
beta-glucosidase-like glycosyl hydrolase
scnpilot_solids1_trim150_scaffold_603_26
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27945..28409)
DNA (465bp) protein (155aa)
beta-glucosidase; K05349 beta-glucosidase [EC:3.2.1.21]
beta-D-glucoside glucohydrolase n=1 Tax=Hymenobacter norwichensis RepID=UPI0003B329D4
Contig79, whole genome shotgun sequence {ECO:0000313|EMBL:KIO75883.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
Displaying 27 items

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