ggKbase home page

scnpilot_solids1_trim150_scaffold_953

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_953_1
Niabella soli, Niabella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(3..644)
DNA (642bp) protein (214aa)
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; K01835 phosphoglucomutase [EC:5.4.2.2]
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I n=1 Tax=Niabella soli DSM 19437 RepID=H1NP97_9SPHI
Phosphoglucomutase {ECO:0000313|EMBL:AHF15064.1}; TaxID=929713 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niabella.;" source="Niabella soli DSM 19437.;"
scnpilot_solids1_trim150_scaffold_953_2
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

723..1718
DNA (996bp) protein (332aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036D2BCF
Uncharacterized protein {ECO:0000313|EMBL:GAO45325.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_953_3
unknown

Not on your lists

2202..2330
DNA (129bp) protein (43aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_953_4
unknown

Not on your lists

2380..2505
DNA (126bp) protein (42aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_953_5
Nitrosococcus halophilus, Nitrosococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2752..3711
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C2Z4_NITHN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADE14886.1}; TaxID=472759 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Nitrosococcus.;" source="Nitrosococcus halophilus (strain Nc4).;"
scnpilot_solids1_trim150_scaffold_953_6
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3744..4022
DNA (279bp) protein (93aa)
Putative uncharacterized protein n=1 Tax=Gramella forsetii (strain KT0803) RepID=A0M0H0_GRAFK
Acyl-CoA acyltransferase {ECO:0000313|EMBL:KJJ38973.1}; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibacter vladivostokensis.;"
hypothetical protein; K06975
scnpilot_solids1_trim150_scaffold_953_7
Algoriphagus machipongonensis, Algoriphagus, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4222..4656
DNA (435bp) protein (145aa)
PhnB protein n=1 Tax=Algoriphagus machipongonensis RepID=A3I189_9BACT
PhnB protein {ECO:0000313|EMBL:EAZ80235.1}; TaxID=388413 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Algoriphagus.;" source="Algoriphagus machipongonensis.;"
hypothetical protein; K04750 PhnB protein
scnpilot_solids1_trim150_scaffold_953_8
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(4665..5168)
DNA (504bp) protein (168aa)
phosphoribosyltransferase; K02825 pyrimidine operon attenuation protein / uracil phosphoribosyltransferase [EC:2.4.2.9]
Phosphoribosyltransferase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THW6_NIAKG
Phosphoribosyltransferase {ECO:0000313|EMBL:AEV98561.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_953_9
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

5272..6351
DNA (1080bp) protein (360aa)
peptide transporter n=1 Tax=Niabella aurantiaca RepID=UPI000371DC78
ABC transporter; K02034 peptide/nickel transport system permease protein
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEW02715.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_953_10
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(6903..8168)
DNA (1266bp) protein (422aa)
Multidrug and toxin extrusion (MATE) family efflux pump YdhE/NorM n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GST7_9SPHI
Multidrug transporter MATE {ECO:0000313|EMBL:KIC93789.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
MATE efflux family protein; K03327 multidrug resistance protein, MATE family
scnpilot_solids1_trim150_scaffold_953_11
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8201..9223)
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000372885A
ABC transporter permease {ECO:0000313|EMBL:KEQ28440.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
hypothetical protein; K02067 putative ABC transport system substrate-binding protein
scnpilot_solids1_trim150_scaffold_953_12
Pedobacter glucosidilyticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9225..9998)
DNA (774bp) protein (258aa)
sulfate-transporting ATPase (EC:3.6.3.25); K02065 putative ABC transport system ATP-binding protein rbh
Sulfate-transporting ATPase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EIQ1_RUNSL rbh
Glutamine transport ATP-binding protein GlnQ {ECO:0000313|EMBL:KHJ38274.1}; TaxID=1122941 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter glucosidilyticus.;"
scnpilot_solids1_trim150_scaffold_953_13
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(9998..10786)
DNA (789bp) protein (263aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00036109D2
Contig48, whole genome shotgun sequence {ECO:0000313|EMBL:KIO77046.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
hypothetical protein; K02066 putative ABC transport system permease protein
scnpilot_solids1_trim150_scaffold_953_14
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11170..11754
DNA (585bp) protein (195aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331};; ATP-AMP transphosphorylase {ECO:0000256|HAMAP-Rule:MF_00235}; ATP:AMP phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00235}; Adenylate monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_00235}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibac
adenylate kinase; K00939 adenylate kinase [EC:2.7.4.3]
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037E85A0
scnpilot_solids1_trim150_scaffold_953_15
unknown

Not on your lists

comp(12111..12302)
DNA (192bp) protein (64aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_953_16
unknown

Not on your lists

12715..12843
DNA (129bp) protein (43aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_953_17
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(13170..15242)
DNA (2073bp) protein (691aa)
phenylacetic acid degradation protein paaN; K02618 oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase [EC:3.7.1.16 1.17.1.7]
Phenylacetic acid degradation protein paaN n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8U5_NIAKG
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_953_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

15331..16086
DNA (756bp) protein (252aa)
Enoyl-CoA hydratase/isomerase; K13766 methylglutaconyl-CoA hydratase [EC:4.2.1.18]
Enoyl-CoA hydratase/isomerase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T8U6_NIAKG
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AEW02303.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_solids1_trim150_scaffold_953_19
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(16248..17036)
DNA (789bp) protein (263aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y9X5_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ31158.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_953_20
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(17088..17792)
DNA (705bp) protein (235aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PM56_CHIPD
hypothetical protein
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_solids1_trim150_scaffold_953_21
BJP_IG2102_Bacteroidetes_40_9, Bacteroidetes, Bacteria

Not on your lists

18334..20967
DNA (2634bp) protein (878aa)
Uncharacterized protein n=1 Tax=Haliscomenobacter hydrossis (strain ATCC 27775 / DSM 1100 / LMG 10767 / O) RepID=F4L5A2_HALH1 rbh
hypothetical protein rbh
Tax=BJP_IG2102_Bacteroidetes_40_9
scnpilot_solids1_trim150_scaffold_953_22
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20979..21392
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003722D38
Uncharacterized protein {ECO:0000313|EMBL:KIC94357.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
zinc-binding CMP/dCMP deaminase
scnpilot_solids1_trim150_scaffold_953_23
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

21519..22361
DNA (843bp) protein (281aa)
carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Streptomyces sp. SS RepID=UPI00037B3CE4
Uncharacterized protein {ECO:0000313|EMBL:AHG88492.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_953_24
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

22421..22918
DNA (498bp) protein (166aa)
GreA-like transcription elongation factor n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BEE5_ZUNPS
GreA-like transcription elongation factor; K04760 transcription elongation factor GreB
GreA-like transcription elongation factor {ECO:0000313|EMBL:ADF52904.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
scnpilot_solids1_trim150_scaffold_953_25
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

22957..23607
DNA (651bp) protein (217aa)
Thiopurine S-methyltransferase (TPMT) n=1 Tax=Sphingobacterium spiritivorum ATCC 33300 RepID=C2FRW0_9SPHI
Thiopurine S-methyltransferase (TPMT) {ECO:0000313|EMBL:EEI94325.1}; TaxID=525372 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33300.;"
type 12 methyltransferase
scnpilot_solids1_trim150_scaffold_953_26
Capnocytophaga canimorsus, Capnocytophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

23636..23965
DNA (330bp) protein (110aa)
thioredoxin n=1 Tax=Bacteroides propionicifaciens RepID=UPI000365B0B3
Thioredoxin {ECO:0000313|EMBL:CEN54278.1}; TaxID=28188 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga.;" source="Capnocytophaga canimorsus.;"
thioredoxin
scnpilot_solids1_trim150_scaffold_953_27
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

24114..24611
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI000363D750
Uncharacterized protein {ECO:0000313|EMBL:CDM66393.1}; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_953_28
Chryseobacterium jeonii, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(24755..26182)
DNA (1428bp) protein (476aa)
L-2,4-diaminobutyrate decarboxylase n=1 Tax=Cecembia lonarensis LW9 RepID=K1L505_9BACT rbh
L-2,4-diaminobutyrate decarboxylase {ECO:0000313|EMBL:KIA90424.1}; TaxID=266749 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium jeonii.;"
aromatic-L-amino-acid decarboxylase rbh
scnpilot_solids1_trim150_scaffold_953_29
Chryseobacterium jeonii, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26280..26717)
DNA (438bp) protein (146aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=266749 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium jeonii.;"
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI00035FA19C
pcaC; carboxymuconolactone decarboxylase
scnpilot_solids1_trim150_scaffold_953_30
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(26889..27410)
DNA (522bp) protein (174aa)
Methyltransferase type 11 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PE82_CHIPD
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ACU63291.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Displaying items 1-30 of 35 in total

View Taxonomy