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scnpilot_solids1_trim150_scaffold_3453

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_3453_1
unknown

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1..189
DNA (189bp) protein (63aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_3453_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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468..1526
DNA (1059bp) protein (353aa)
radical SAM protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PP05_CHIPD
scnpilot_solids1_trim150_scaffold_3453_3
Chryseobacterium gleum, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(1653..2300)
DNA (648bp) protein (216aa)
Acetyltransferase, GNAT family n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=D7W3Y5_9FLAO
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFK32927.1}; TaxID=525257 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium gleum ATCC 35910.;"
scnpilot_solids1_trim150_scaffold_3453_4
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(2263..5400)
DNA (3138bp) protein (1046aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5Y9_PALPW rbh
heavy metal efflux pump, czca family; K15726 cobalt-zinc-cadmium resistance protein CzcA rbh
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:ADQ80133.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_solids1_trim150_scaffold_3453_5
Paludibacter propionicigenes, Paludibacter, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(5419..6510)
DNA (1092bp) protein (364aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4) RepID=E4T5Z0_PALPW rbh
efflux transporter, rnd family, mfp subunit; K15727 cobalt-zinc-cadmium resistance protein CzcB rbh
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADQ80134.1}; Flags: Precursor;; TaxID=694427 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Paludibacter.;" source="Paludibacter propionicigenes (strain DSM 17365 / JCM 13257 / WB4).;"
scnpilot_solids1_trim150_scaffold_3453_6
Pedobacter sp. NL19, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(6529..7767)
DNA (1239bp) protein (413aa)
Outer membrane protein n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KN51_SOLCM rbh
Contig2, whole genome shotgun sequence {ECO:0000313|EMBL:KIO79031.1}; TaxID=1503925 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter sp. NL19.;"
outer membrane protein rbh
scnpilot_solids1_trim150_scaffold_3453_7
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(8460..9101)
DNA (642bp) protein (214aa)
Cellulase n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y1C1_PEDHD
cellulase
Cellulase {ECO:0000313|EMBL:ACU02897.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
Displaying 7 items

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