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scnpilot_solids1_trim150_scaffold_1027

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1027_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1..231
DNA (231bp) protein (77aa)
Type IV pilus secretin PilQ/competence protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W299_9GAMM
Type IV pilus secretin PilQ/competence protein {ECO:0000313|EMBL:EIL93590.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
type IV pilus secretin PilQ/competence protein
scnpilot_solids1_trim150_scaffold_1027_2
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

402..1397
DNA (996bp) protein (332aa)
MoxR-like ATPase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNG3_9GAMM
MoxR-like ATPase {ECO:0000313|EMBL:EIM01005.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
MoxR-like ATPase
scnpilot_solids1_trim150_scaffold_1027_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1394..2329
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVW2_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG90402.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1027_4
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2326..2862
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNG1_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01003.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1027_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2855..3838
DNA (984bp) protein (328aa)
Mg-chelatase subunit ChlD n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNG0_9GAMM
Mg-chelatase subunit ChlD {ECO:0000313|EMBL:EIM01002.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Mg-chelatase subunit ChlD
scnpilot_solids1_trim150_scaffold_1027_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3835..5742
DNA (1908bp) protein (636aa)
Membrane protein involved in colicin uptake n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W294_9GAMM
Membrane protein involved in colicin uptake {ECO:0000313|EMBL:EIL93585.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
tetratricopeptide repeat protein
scnpilot_solids1_trim150_scaffold_1027_7
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5739..7334
DNA (1596bp) protein (532aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WNF8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM01000.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1027_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7321..7872)
DNA (552bp) protein (184aa)
RNase III inhibitor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WT41_9GAMM
RNase III inhibitor {ECO:0000313|EMBL:EIM02633.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative phosphatase, C-terminal domain of histone macro H2A1 like protein
scnpilot_solids1_trim150_scaffold_1027_9
Dyella japonica, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7937..8398
DNA (462bp) protein (154aa)
MarR family transcriptional regulator n=1 Tax=Dyella japonica RepID=UPI0002D5D7C6
MarR family transcriptional regulator {ECO:0000313|EMBL:AIF46844.1}; TaxID=1217721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella japonica A8.;"
transcriptional regulator
scnpilot_solids1_trim150_scaffold_1027_10
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8576..9706
DNA (1131bp) protein (377aa)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI0002E4FD20 rbh
RND transporter {ECO:0000313|EMBL:AHX11893.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
RND family efflux transporter, MFP subunit
scnpilot_solids1_trim150_scaffold_1027_11
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9714..12812
DNA (3099bp) protein (1033aa)
multidrug transporter n=1 Tax=Dyella japonica RepID=UPI000366E84F rbh
Acriflavine resistance protein B {ECO:0000313|EMBL:AHX15841.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
cation/multidrug efflux pump
scnpilot_solids1_trim150_scaffold_1027_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12853..14289)
DNA (1437bp) protein (479aa)
Peptidase M28 n=1 Tax=Rhodanobacter denitrificans RepID=I4WVV2_9GAMM
Aminopeptidase {ECO:0000313|EMBL:EIL90044.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
putative aminopeptidase
scnpilot_solids1_trim150_scaffold_1027_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14396..14809)
DNA (414bp) protein (138aa)
Large-conductance mechanosensitive channel n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W286_9GAMM
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
large conductance mechanosensitive channel protein
scnpilot_solids1_trim150_scaffold_1027_14
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14892..15578)
DNA (687bp) protein (229aa)
2-keto-4-pentenoate hydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WT48_9GAMM
2-keto-4-pentenoate hydratase {ECO:0000313|EMBL:EIM02640.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase
scnpilot_solids1_trim150_scaffold_1027_15
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15683..16339
DNA (657bp) protein (219aa)
membrane protein n=1 Tax=Dyella japonica RepID=UPI0002FF6C39
Membrane protein {ECO:0000313|EMBL:AHX15848.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
ABC-type transport system, involved in lipoprotein release, permease component
scnpilot_solids1_trim150_scaffold_1027_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16381..17871)
DNA (1491bp) protein (497aa)
Short chain fatty acid transporter n=1 Tax=Rhodanobacter denitrificans RepID=I4WVU5_9GAMM rbh
short chain fatty acids transporter rbh
Short chain fatty acids transporter {ECO:0000313|EMBL:AGG90385.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1027_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17959..18804)
DNA (846bp) protein (282aa)
DMT(Drug/metabolite transporter) superfamily permease n=2 Tax=Rhodanobacter denitrificans RepID=M4NHK4_9GAMM
DMT(drug/metabolite transporter) superfamily permease
DMT(Drug/metabolite transporter) superfamily permease {ECO:0000313|EMBL:AGG90384.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1027_18
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18868..19146)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WVU3_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1027_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19224..19595
DNA (372bp) protein (124aa)
Rieske (2Fe-2S) iron-sulfur domain-containing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W277_9GAMM
Rieske (2Fe-2S) iron-sulfur domain-containing protein {ECO:0000313|EMBL:EIL93568.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ferredoxin subunit of nitrite reductase and ring-hydroxylating dioxygenase
scnpilot_solids1_trim150_scaffold_1027_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19624..21465)
DNA (1842bp) protein (614aa)
Di-and tricarboxylate transporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVB7_9GAMM
Di-and tricarboxylate transporter {ECO:0000313|EMBL:EIL91158.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
di-/tricarboxylate transporter
scnpilot_solids1_trim150_scaffold_1027_21
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21821..22663)
DNA (843bp) protein (281aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VVB9_9GAMM
scnpilot_solids1_trim150_scaffold_1027_22
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22673..24880)
DNA (2208bp) protein (736aa)
Fe2+-dicitrate sensor, membrane component n=1 Tax=Rhodanobacter denitrificans RepID=M4NJW0_9GAMM
Fe2+-dicitrate sensor, membrane component
Fe2+-dicitrate sensor, membrane component {ECO:0000313|EMBL:AGG90377.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1027_trna_1
unknown

Not on your lists

25075..25145
DNA (71bp)
transferRNA Gly
scnpilot_solids1_trim150_scaffold_1027_23
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25372..27288
DNA (1917bp) protein (639aa)
Integrase family protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UNF2_PSEUP rbh
integrase family protein rbh
Integrase family protein {ECO:0000313|EMBL:AER55383.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
scnpilot_solids1_trim150_scaffold_1027_24
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27170..27826)
DNA (657bp) protein (219aa)
Regulatory protein, LysR-family n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P5I9_AROAE
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO21749.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
reg2; LysR family transcriptional regulator
scnpilot_solids1_trim150_scaffold_1027_25
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28256..30040)
DNA (1785bp) protein (595aa)
Relaxase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UNV6_PSEUP rbh
Relaxase rbh
Relaxase {ECO:0000313|EMBL:AER55457.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
scnpilot_solids1_trim150_scaffold_1027_26
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30353..30670
DNA (318bp) protein (106aa)
Transcriptional regulator, AbrB family n=4 Tax=Proteobacteria RepID=A9C316_DELAS
suppressor protein
Probable suppressor protein {ECO:0000313|EMBL:CAP44604.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
scnpilot_solids1_trim150_scaffold_1027_27
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30670..31182
DNA (513bp) protein (171aa)
Uncharacterized protein n=3 Tax=Proteobacteria RepID=A9C315_DELAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAP44605.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
scnpilot_solids1_trim150_scaffold_1027_28
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31524..32468)
DNA (945bp) protein (315aa)
Putative transmembrane transporter protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UNF6_PSEUP rbh
putative transmembrane transporter protein; K07245 putative copper resistance protein D rbh
Putative transmembrane transporter protein {ECO:0000313|EMBL:AER55387.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
scnpilot_solids1_trim150_scaffold_1027_29
Pseudoxanthomonas spadix, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32481..32864)
DNA (384bp) protein (128aa)
Putative copper resistance protein n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UNF7_PSEUP
putative copper resistance protein; K07156
Putative copper resistance protein {ECO:0000313|EMBL:AER55388.1}; TaxID=1045855 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas spadix (strain BD-a59).;"
Displaying items 1-30 of 34 in total

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