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scnpilot_solids1_trim150_scaffold_1038

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1038_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..491)
DNA (489bp) protein (163aa)
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIH1_9GAMM
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase {ECO:0000313|EMBL:AGG90699.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1038_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(496..1206)
DNA (711bp) protein (237aa)
3-demethylubiquinone-9 3-methyltransferase (EC:2.1.1.64)
Ubiquinone biosynthesis O-methyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIC9_9GAMM
Ubiquinone biosynthesis O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472, ECO:0000256|SAAS:SAAS00063564}; 2-polyprenyl-6-hydroxyphenol methylase {ECO:0000256|HAMAP-Rule:MF_00472}; 3-demethylubiquinone 3-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00472}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1038_3
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1184..2332)
DNA (1149bp) protein (383aa)
3-dehydroquinate synthetase (EC:4.2.3.4)
2-epi-5-epi-valiolone synthase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCD2_9GAMM
3-dehydroquinate synthase {ECO:0000256|SAAS:SAAS00196478}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_1038_4
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2329..2814)
DNA (486bp) protein (162aa)
S-ribosylhomocysteine lyase {ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|SAAS:SAAS00059628};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
LuxS protein involved in autoinducer AI2 synthesis n=1 Tax=Rhodanobacter denitrificans RepID=M4NKU1_9GAMM
LuxS protein involved in autoinducer AI2 synthesis
scnpilot_solids1_trim150_scaffold_1038_5
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2818..4056)
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCD4_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL97125.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
sugar phosphate isomerase/epimerase
scnpilot_solids1_trim150_scaffold_1038_6
unknown

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comp(4303..4779)
DNA (477bp) protein (159aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1038_7
Mesorhizobium sp. L2C054A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4776..6239)
DNA (1464bp) protein (488aa)
hypothetical protein n=1 Tax=Meganema perideroedes RepID=UPI00037B0E2A
Tyrosinase {ECO:0000313|EMBL:ESZ51045.1}; TaxID=1287100 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C054A000.;"
tyrosinase family protein
scnpilot_solids1_trim150_scaffold_1038_8
unknown

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comp(6311..6451)
DNA (141bp) protein (47aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1038_9
BJP_IG2103_Bacteroidetes_41_9, Bacteroidetes, Bacteria

Not on your lists

comp(6467..7426)
DNA (960bp) protein (320aa)
Hypothetical membrane protein n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0KZF2_ZOBGA
hypothetical protein
Tax=BJP_IG2103_Bacteroidetes_41_9
scnpilot_solids1_trim150_scaffold_1038_10
unknown

Not on your lists

comp(7429..7746)
DNA (318bp) protein (106aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1038_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8207..9496)
DNA (1290bp) protein (430aa)
Cytochrome c, class I n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXY7_9GAMM
Cytochrome c, class I {ECO:0000313|EMBL:EIL92078.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome c, mono- and diheme variants family
scnpilot_solids1_trim150_scaffold_1038_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9493..10227)
DNA (735bp) protein (245aa)
Cytochrome c n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXY6_9GAMM
Cytochrome c {ECO:0000313|EMBL:EIL92077.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
cytochrome c553
scnpilot_solids1_trim150_scaffold_1038_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10612..11763
DNA (1152bp) protein (384aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXY5_9GAMM
scnpilot_solids1_trim150_scaffold_1038_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11787..12752
DNA (966bp) protein (322aa)
Homoserine kinase {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832}; Short=HK {ECO:0000256|HAMAP-Rule:MF_00384};; Short=HSK {ECO:0000256|HAMAP-Rule:MF_00384};; EC=2.7.1.39 {ECO:0000256|HAMAP-Rule:MF_00384, ECO:0000256|SAAS:SAAS00129832};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
homoserine kinase (EC:2.7.1.39)
Homoserine kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXY4_9GAMM
scnpilot_solids1_trim150_scaffold_1038_15
unknown

Not on your lists

12749..12928
DNA (180bp) protein (60aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1038_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12921..14249
DNA (1329bp) protein (443aa)
Threonine synthase n=1 Tax=Rhodanobacter denitrificans RepID=M4NIH9_9GAMM
threonine synthase
Threonine synthase {ECO:0000313|EMBL:AGG90709.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1038_17
unknown

Not on your lists

14292..14816
DNA (525bp) protein (175aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1038_18
Xanthomonas arboricola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14895..15332
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI0003461251
Uncharacterized protein {ECO:0000313|EMBL:GAE53577.1}; TaxID=1418095 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas arboricola pv. pruni MAFF 301420.;"
scnpilot_solids1_trim150_scaffold_1038_19
unknown

Not on your lists

comp(16936..17241)
DNA (306bp) protein (102aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1038_20
unknown

Not on your lists

17302..17529
DNA (228bp) protein (76aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1038_21
Luteibacter yeojuensis, Luteibacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17541..18113
DNA (573bp) protein (191aa)
Uncharacterized protein n=1 Tax=Neisseria sp. oral taxon 014 str. F0314 RepID=D7MZE3_9NEIS
Uncharacterized protein {ECO:0000313|EMBL:KJV37373.1}; TaxID=345309 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Luteibacter.;" source="Luteibacter yeojuensis.;"
scnpilot_solids1_trim150_scaffold_1038_22
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18530..20119
DNA (1590bp) protein (530aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
2-isopropylmalate synthase (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Rhodanobacter sp. 115 RepID=I4W9C2_9GAMM rbh
scnpilot_solids1_trim150_scaffold_1038_23
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20116..21111
DNA (996bp) protein (332aa)
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42) rbh
Branched chain amino acid aminotransferase apoenzyme {ECO:0000313|EMBL:AGG90712.1}; EC=2.6.1.42 {ECO:0000313|EMBL:AGG90712.1};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Branched chain amino acid aminotransferase apoenzyme n=1 Tax=Rhodanobacter denitrificans RepID=M4NKV3_9GAMM rbh
scnpilot_solids1_trim150_scaffold_1038_24
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21108..21869
DNA (762bp) protein (254aa)
3-isopropylmalate dehydratase large subunit n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WCE4_9GAMM
3-isopropylmalate dehydratase, large subunit
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1038_25
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21884..22486
DNA (603bp) protein (201aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
3-isopropylmalate dehydratase large subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXY0_9GAMM
3-isopropylmalate dehydratase, large subunit
scnpilot_solids1_trim150_scaffold_1038_26
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22626..23207
DNA (582bp) protein (194aa)
3-isopropylmalate dehydratase small subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4VXX9_9GAMM
3-isopropylmalate dehydratase, small subunit rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1038_27
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23204..24532
DNA (1329bp) protein (443aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
3-isopropylmalate dehydrogenase n=1 Tax=Rhodanobacter denitrificans RepID=I4WK95_9GAMM
3-isopropylmalate dehydrogenase
scnpilot_solids1_trim150_scaffold_1038_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24522..25790
DNA (1269bp) protein (423aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
Dihydroxy-acid dehydratase n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WGI9_9GAMM
dihydroxyacid dehydratase/phosphogluconate dehydratase
Displaying 28 items

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