ggKbase home page

scnpilot_solids1_trim150_scaffold_1096

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1096_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..525)
DNA (525bp) protein (175aa)
UvrABC system protein B n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W0R7_9GAMM
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_00204}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Excinuclease ABC subunit B
scnpilot_solids1_trim150_scaffold_1096_2
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

677..1225
DNA (549bp) protein (183aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NJK0_9GAMM
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGG89863.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1096_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1235..2146)
DNA (912bp) protein (304aa)
Putative acyltransferase n=1 Tax=Rhodanobacter denitrificans RepID=M4NKC9_9GAMM
putative acyltransferase
Putative acyltransferase {ECO:0000313|EMBL:AGG88236.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1096_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2094..2984)
DNA (891bp) protein (297aa)
2-dehydropantoate 2-reductase {ECO:0000256|RuleBase:RU003776}; EC=1.1.1.169 {ECO:0000256|RuleBase:RU003776};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ketopantoate reductase (EC:1.1.1.169)
2-dehydropantoate 2-reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5G3_9GAMM
scnpilot_solids1_trim150_scaffold_1096_5
Marinobacter sp. ELB17, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3212..4495
DNA (1284bp) protein (428aa)
Site-specific recombinase, phage integrase family n=1 Tax=Pseudomonas chlororaphis O6 RepID=I4XZ96_9PSED rbh
Integrase/recombinase {ECO:0000313|EMBL:EBA00649.1}; TaxID=270374 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;" source="Marinobacter sp. ELB17.;"
integrase/recombinase rbh
scnpilot_solids1_trim150_scaffold_1096_6
Serratia fonticola, Serratia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4488..6215
DNA (1728bp) protein (576aa)
Uncharacterized protein n=1 Tax=Pseudomonas chlororaphis O6 RepID=I4XZD2_9PSED rbh
Integrase {ECO:0000313|EMBL:AKG71801.1}; TaxID=47917 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Serratia.;" source="Serratia fonticola.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_1096_7
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6212..8275
DNA (2064bp) protein (688aa)
Uncharacterized protein n=1 Tax=Pseudomonas chlororaphis O6 RepID=I4XZ59_9PSED rbh
Uncharacterized protein {ECO:0000313|EMBL:EJL81202.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
hypothetical protein rbh
scnpilot_solids1_trim150_scaffold_1096_8
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8782..9216)
DNA (435bp) protein (145aa)
Transcription regulator protein, arsenical resistance operon repressor n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WP01_9GAMM
Transcription regulator protein, arsenical resistance operon repressor {ECO:0000313|EMBL:EIM01193.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
putative transcriptional regulator
scnpilot_solids1_trim150_scaffold_1096_9
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9223..9735)
DNA (513bp) protein (171aa)
Low molecular weight phosphotyrosine protein phosphatase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSY5_9GAMM rbh
Low molecular weight phosphotyrosine protein phosphatase {ECO:0000313|EMBL:EIL90326.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
protein-tyrosine-phosphatase
scnpilot_solids1_trim150_scaffold_1096_10
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9749..10837)
DNA (1089bp) protein (363aa)
Putative arsenite transmembrane efflux pump transporter protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSY6_9GAMM rbh
Putative arsenite transmembrane efflux pump transporter protein {ECO:0000313|EMBL:EIL90327.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
arsenical-resistance protein
scnpilot_solids1_trim150_scaffold_1096_11
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10834..11325)
DNA (492bp) protein (164aa)
Putative arsenate reductase ArsC n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VSY7_9GAMM rbh
Putative arsenate reductase ArsC {ECO:0000313|EMBL:EIL90328.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
protein-tyrosine-phosphatase
scnpilot_solids1_trim150_scaffold_1096_12
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11399..12184
DNA (786bp) protein (262aa)
Arsenical resistance protein ArsH n=1 Tax=Rhodanobacter denitrificans RepID=M4NGT3_9GAMM
arsenical resistance protein ArsH
Arsenical resistance protein ArsH {ECO:0000313|EMBL:AGG88863.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1096_13
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12184..12636
DNA (453bp) protein (151aa)
Arsenate reductase {ECO:0000256|RuleBase:RU362029}; EC=1.20.4.1 {ECO:0000256|RuleBase:RU362029};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Glutaredoxin-dependent arsenate reductase n=1 Tax=Rhodanobacter denitrificans RepID=M4NDQ0_9GAMM
glutaredoxin-dependent arsenate reductase
scnpilot_solids1_trim150_scaffold_1096_14
unknown

Not on your lists

comp(12779..12904)
DNA (126bp) protein (42aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1096_15
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12906..13820)
DNA (915bp) protein (305aa)
Putative acyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5G2_9GAMM
1-acyl-sn-glycerol-3-phosphate acyltransferase
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_1096_16
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13892..15136)
DNA (1245bp) protein (415aa)
cysteine desulfurase-like protein, SufS subfamily (EC:2.8.1.7)
Cysteine desulfurase {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216}; EC=2.8.1.7 {ECO:0000256|RuleBase:RU004506, ECO:0000256|SAAS:SAAS00062216};; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
Cysteine desulfurase n=1 Tax=Rhodanobacter denitrificans RepID=I4WNT3_9GAMM
scnpilot_solids1_trim150_scaffold_1096_17
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15268..16566)
DNA (1299bp) protein (433aa)
FeS assembly protein SufD n=1 Tax=Rhodanobacter denitrificans RepID=I4WNT2_9GAMM
Iron-regulated ABC transporter permease protein SufD
Iron-regulated ABC transporter permease protein SufD {ECO:0000313|EMBL:AGG88231.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1096_18
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16563..17342)
DNA (780bp) protein (260aa)
FeS assembly ATPase SufC n=1 Tax=Rhodanobacter denitrificans RepID=I4WNT1_9GAMM
FeS assembly ATPase SufC
FeS assembly ATPase SufC {ECO:0000313|EMBL:AGG88230.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1096_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17482..18930)
DNA (1449bp) protein (483aa)
Cysteine desulfurase activator complex subunit SufB n=1 Tax=Rhodanobacter denitrificans RepID=I4WNT0_9GAMM
Iron-regulated ABC transporter membrane component SufB
Iron-regulated ABC transporter membrane component SufB {ECO:0000313|EMBL:AGG88229.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_1096_20
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18927..19271)
DNA (345bp) protein (115aa)
FeS assembly SUF system regulator, gammaproteobacterial n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VJG3_9GAMM
FeS assembly SUF system regulator, gammaproteobacterial {ECO:0000313|EMBL:EIL87354.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
transcriptional regulator, BadM/Rrf2 family
Displaying 20 items

View Taxonomy