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scnpilot_solids1_trim150_scaffold_2017_2

Organism: SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_68_47

partial RP 5 / 55 BSCG 8 / 51 ASCG 5 / 38
Location: 1088..1612

Top 3 Functional Annotations

Value Algorithm Source
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3S2_9GAMM similarity UNIREF
DB: UNIREF100
  • Identity: 89.1
  • Coverage: 174.0
  • Bit_score: 308
  • Evalue 5.00e-81
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:EIL94113.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.1
  • Coverage: 174.0
  • Bit_score: 308
  • Evalue 7.00e-81
RNA polymerase, sigma subunit, ECF family similarity KEGG
DB: KEGG
  • Identity: 90.2
  • Coverage: 174.0
  • Bit_score: 307
  • Evalue 2.70e-81

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Taxonomy

Rhodanobacter spathiphylli → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 525
ATGGCCGCCGCGCAGGCCGGCGACCGGCGTGCCTACGAAAAACTGCTGGCCGATTCGGTGGCGCTGATCCGCGCCGTGGCACGCCGCCAGGGTGTGGCGCCCGATCATCTGGATGACGTGGTGCAGGAAACCCTGATCACCGTGCATCGCGTGCGCCAGACCTACGACCCCAGCCGTTCCTACGACGCCTGGCTCGGCGCGATCGCCGCTCGCCGCGCGATCGACTCCCTGCGCAGCCGCGGTCGCCGCGACAGCCGCGAACTGCACGATGAATTCGCGCTCGACCGTCACCCGGATGCCGACGACGCCAGCGCCGCCACCGAAAGCGAGCAGCGCGCACAGCGCCTGCACGAGGCGATCGCCGAGTTGCCGCCCGGCCAGCGCGAGGCGGTGGAACAGCTTGGCCTGCGCGAGCGCTCGCTCAGCGAGGCGGCCGAGCTGACCGGGCGCAATACCGGCGCGCTGAAAGTGAACCTGCATCGCGCGCTGAAGGCACTGCGCGAACGTTTCCATGGAGAACCCTGA
PROTEIN sequence
Length: 175
MAAAQAGDRRAYEKLLADSVALIRAVARRQGVAPDHLDDVVQETLITVHRVRQTYDPSRSYDAWLGAIAARRAIDSLRSRGRRDSRELHDEFALDRHPDADDASAATESEQRAQRLHEAIAELPPGQREAVEQLGLRERSLSEAAELTGRNTGALKVNLHRALKALRERFHGEP*