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scnpilot_solids1_trim150_scaffold_2017

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2017_1
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..915)
DNA (915bp) protein (305aa)
Cytochrome c biogenesis protein n=1 Tax=Rhodanobacter denitrificans RepID=M4NFU9_9GAMM
cytochrome c biogenesis protein
Cytochrome c biogenesis protein {ECO:0000313|EMBL:AGG89769.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_2017_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1088..1612
DNA (525bp) protein (175aa)
ECF subfamily RNA polymerase sigma-24 subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3S2_9GAMM
ECF subfamily RNA polymerase sigma-24 subunit {ECO:0000313|EMBL:EIL94113.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RNA polymerase, sigma subunit, ECF family
scnpilot_solids1_trim150_scaffold_2017_3
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1599..2270
DNA (672bp) protein (224aa)
Uncharacterized protein n=2 Tax=Rhodanobacter denitrificans RepID=M4NI39_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGG89767.1}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_2017_4
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2460..2942)
DNA (483bp) protein (161aa)
UPF0234 protein UUC_02196 n=1 Tax=Rhodanobacter denitrificans RepID=I4WY51_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_2017_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3171..4337
DNA (1167bp) protein (389aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3R9_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94110.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
flavoprotein, HI0933 family
scnpilot_solids1_trim150_scaffold_2017_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4447..5085
DNA (639bp) protein (213aa)
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3R8_9GAMM
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD {ECO:0000313|EMBL:EIL94109.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD
scnpilot_solids1_trim150_scaffold_2017_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5082..5465
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3R7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94108.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2017_8
Arenimonas composti, Arenimonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5479..6288)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI000349B097 rbh
Uncharacterized protein {ECO:0000313|EMBL:KFN47718.1}; TaxID=1121013 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas.;" source="Arenimonas composti TR7-09 = DSM 18010.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2017_9
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6397..7275)
DNA (879bp) protein (293aa)
Phenazine biosynthesis protein PhzF family protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUB0_9GAMM
phenazine biosynthesis protein PhzF family
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
scnpilot_solids1_trim150_scaffold_2017_10
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7460..8062
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUB1_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EIM03053.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
scnpilot_solids1_trim150_scaffold_2017_11
unknown

Not on your lists

comp(8315..8602)
DNA (288bp) protein (96aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2017_12
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8682..8894
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W002_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL92793.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
scnpilot_solids1_trim150_scaffold_2017_13
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8995..9399
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WY57_9GAMM
hypothetical protein
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_2017_14
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9500..10549
DNA (1050bp) protein (350aa)
Putative aminopeptidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WY58_9GAMM
putative aminopeptidase
Putative aminopeptidase {ECO:0000313|EMBL:AGG89759.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_2017_15
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10554..11417)
DNA (864bp) protein (288aa)
Cytochrome c1 n=1 Tax=Rhodanobacter denitrificans RepID=M4NJ90_9GAMM
cytochrome c1
Cytochrome c1 {ECO:0000313|EMBL:AGG89758.1}; Flags: Precursor;; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_2017_16
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11741..12925
DNA (1185bp) protein (395aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838}; Short=NAPRTase {ECO:0000256|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Nicotinate phosphoribosyltransferase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZZ9_9GAMM
nicotinate phosphoribosyltransferase
scnpilot_solids1_trim150_scaffold_2017_17
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13087..13641
DNA (555bp) protein (185aa)
Glutathione peroxidase n=1 Tax=Rhodanobacter denitrificans RepID=I4WY64_9GAMM
Glutathione peroxidase {ECO:0000256|RuleBase:RU000499}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
glutathione peroxidase
scnpilot_solids1_trim150_scaffold_2017_18
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13804..14286
DNA (483bp) protein (161aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4VZZ3_9GAMM
FKBP-type peptidyl-prolyl cis-trans isomerase
scnpilot_solids1_trim150_scaffold_2017_19
unknown

Not on your lists

14297..14431
DNA (135bp) protein (45aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_2017_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14392..15507)
DNA (1116bp) protein (372aa)
Phospholipase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3Q1_9GAMM
Phospholipase {ECO:0000313|EMBL:EIL94092.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
outer membrane phospholipase A
scnpilot_solids1_trim150_scaffold_2017_21
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15584..15934)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Rhodanobacter sp. 115 RepID=I4W954_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL95995.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2017_22
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16136..17347
DNA (1212bp) protein (404aa)
Uncharacterized protein n=1 Tax=Rhodanobacter thiooxydans LCS2 RepID=I4WUC3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIM03065.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_2017_23
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17357..17806)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W3P8_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL94089.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
Displaying 23 items

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