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scnpilot_solids1_trim150_scaffold_937

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_937_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..390)
DNA (390bp) protein (130aa)
preprotein translocase subunit SecB; K03071 preprotein translocase subunit SecB id=12493224 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
preprotein translocase subunit SecB; K03071 preprotein translocase subunit SecB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_937_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(500..928)
DNA (429bp) protein (143aa)
thioredoxin; K03672 thioredoxin 2 [EC:1.8.1.8] id=12493225 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
thioredoxin; K03672 thioredoxin 2 [EC:1.8.1.8]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_937_3
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1013..1276)
DNA (264bp) protein (88aa)
glutaredoxin, GrxC; K03676 glutaredoxin 3 id=12493226 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
glutaredoxin, GrxC; K03676 glutaredoxin 3
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_937_4
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1610..1828)
DNA (219bp) protein (73aa)
hypothetical protein id=12493228 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_937_5
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1878..5162)
DNA (3285bp) protein (1095aa)
acriflavin resistance protein id=12493229 bin=THIO_HI species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
acriflavin resistance protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_937_6
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5155..6258)
DNA (1104bp) protein (368aa)
putative Secretion protein HlyD id=12493230 bin=THIO_HI species=Thiomonas arsenitoxydans genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
putative Secretion protein HlyD rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_937_7
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6269..7666)
DNA (1398bp) protein (466aa)
outer membrane efflux protein id=12493231 bin=THIO_HI species=Thiomonas intermedia genus=Thiomonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
outer membrane efflux protein rbh
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_937_8

Not on your lists

comp(7790..8281)
DNA (492bp) protein (164aa)
nsrR; HTH-type transcriptional regulator NsrR id=12493232 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
HTH-type transcriptional regulator nsrR {ECO:0000313|EMBL:CBI09185.1}; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
nsrR; HTH-type transcriptional regulator NsrR
scnpilot_solids1_trim150_scaffold_937_9
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8472..9527
DNA (1056bp) protein (352aa)
multicopper oxidase type 1 id=12493233 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
multicopper oxidase type 1 rbh
Putative multicopper oxidase {ECO:0000313|EMBL:CAL63355.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
scnpilot_solids1_trim150_scaffold_937_10
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9543..10238
DNA (696bp) protein (232aa)
cytochrome c, class I id=12493234 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
cytochrome c, class I rbh
Cytochrome c, class I {ECO:0000313|EMBL:CAD84837.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
scnpilot_solids1_trim150_scaffold_937_11
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10241..10633
DNA (393bp) protein (131aa)
cytochrome c, class IC:cytochrome c, class I; K00406 cytochrome c oxidase cbb3-type subunit III id=12493235 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
cytochrome c, class IC:cytochrome c, class I; K00406 cytochrome c oxidase cbb3-type subunit III
Cytochrome c, class IC:Cytochrome c, class I {ECO:0000313|EMBL:CAD84836.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
scnpilot_solids1_trim150_scaffold_937_12
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10650..11585
DNA (936bp) protein (312aa)
aniA; multicopper oxidase type 1; K00368 nitrite reductase (NO-forming) [EC:1.7.2.1] id=12493236 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
aniA; multicopper oxidase type 1; K00368 nitrite reductase (NO-forming) [EC:1.7.2.1]
Multicopper oxidase type 1 {ECO:0000313|EMBL:CAD84835.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
scnpilot_solids1_trim150_scaffold_937_13
unknown

Not on your lists

11685..11975
DNA (291bp) protein (97aa)
copper-exporting ATPase (EC:3.6.3.4) id=12493237 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
scnpilot_solids1_trim150_scaffold_937_14
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12034..13350
DNA (1317bp) protein (439aa)
heavy metal efflux system protein; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB id=12493238 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
heavy metal efflux system protein; K07798 Cu(I)/Ag(I) efflux system membrane protein CusB
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_937_15
RBG_16_Betaproteobacteria_56_24_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13352..16486
DNA (3135bp) protein (1045aa)
cusA; RND family outer membrane copper/silver/drug transport protein id=12493239 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
cusA; RND family outer membrane copper/silver/drug transport protein rbh
Tax=RBG_16_Betaproteobacteria_56_24_curated
scnpilot_solids1_trim150_scaffold_937_16
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16541..16864)
DNA (324bp) protein (108aa)
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator id=12493240 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ArsR family transcriptional regulator; K03892 ArsR family transcriptional regulator
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_937_17
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17028..18569
DNA (1542bp) protein (514aa)
phosphoglyceromutase (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] id=12493241 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
phosphoglyceromutase (EC:5.4.2.1); K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1]
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids1_trim150_scaffold_937_18
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18599..19846
DNA (1248bp) protein (416aa)
M23 family peptidase id=12493242 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
M23 family peptidase rbh
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids1_trim150_scaffold_937_19
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19848..21203
DNA (1356bp) protein (452aa)
peptidase S41A, protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] id=12493243 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
peptidase S41A, protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102]
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_937_20
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21291..21686
DNA (396bp) protein (132aa)
hypothetical protein id=12493244 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_937_21
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21702..22466
DNA (765bp) protein (255aa)
adenylyltransferase id=12493245 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
adenylyltransferase rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_937_22
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22454..23038)
DNA (585bp) protein (195aa)
slmA, ttk; nucleoid occlusion protein; K05501 TetR/AcrR family transcriptional regulator id=12493246 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
slmA, ttk; nucleoid occlusion protein; K05501 TetR/AcrR family transcriptional regulator
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids1_trim150_scaffold_937_trna_1
unknown

Not on your lists

comp(23095..23168)
DNA (74bp)
transferRNA Met
scnpilot_solids1_trim150_scaffold_937_23
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23159..23581)
DNA (423bp) protein (141aa)
RNA polymerase sigma factor RpoD n=1 Tax=Thiobacillus denitrificans RepID=UPI00036B45C6
carbamoyl-phosphate synthase L chain, ATP-binding; K03086 RNA polymerase primary sigma factor
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying 24 items

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