ggKbase home page

scnpilot_solids1_trim150_scaffold_3006

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_3006_1
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..459
DNA (459bp) protein (153aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] id=12494360 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4); K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_3006_2
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

459..860
DNA (402bp) protein (134aa)
4-hydroxybenzoyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] id=12494361 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
4-hydroxybenzoyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_3006_3
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

946..1494
DNA (549bp) protein (183aa)
MotA/TolQ/ExbB proton channel family protein; K03562 biopolymer transport protein TolQ id=12494362 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Protein TolQ {ECO:0000313|EMBL:EGK70488.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
protein tolq; K03562 biopolymer transport protein TolQ
scnpilot_solids1_trim150_scaffold_3006_4
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1519..1908
DNA (390bp) protein (130aa)
biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR id=12494363 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
biopolymer transport protein ExbD/TolR; K03560 biopolymer transport protein TolR
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:AAZ98161.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
scnpilot_solids1_trim150_scaffold_3006_5
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1905..2762
DNA (858bp) protein (286aa)
putative TonB protein id=12494364 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
putative TonB protein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_3006_6
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2805..4130
DNA (1326bp) protein (442aa)
tolB; translocation protein TolB; K03641 TolB protein id=12494365 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
tolB; translocation protein TolB; K03641 TolB protein rbh
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_3006_7
RIFOXYA1_FULL_Hydrogenophilales_63_33_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4229..4786
DNA (558bp) protein (186aa)
outer membrane protein, porin-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein id=12494366 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
outer membrane protein, porin-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein
Tax=RIFOXYA1_FULL_Hydrogenophilales_63_33_curated
scnpilot_solids1_trim150_scaffold_3006_8
GWE1_Thiobacillus_62_9_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4783..5610
DNA (828bp) protein (276aa)
TPR repeat-containing protein id=12494367 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
TPR repeat-containing protein rbh
Tax=GWE1_Thiobacillus_62_9_curated
scnpilot_solids1_trim150_scaffold_3006_9
RIFOXYD1_FULL_Hydrogenophilales_62_11_curated, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5616..6323
DNA (708bp) protein (236aa)
radical activating enzyme; K10026 queuosine biosynthesis protein QueE id=12494368 bin=THIO_HI species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
radical activating enzyme; K10026 queuosine biosynthesis protein QueE
Tax=RIFOXYD1_FULL_Hydrogenophilales_62_11_curated
scnpilot_solids1_trim150_scaffold_3006_10
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6320..6997
DNA (678bp) protein (226aa)
7-cyano-7-deazaguanine synthase {ECO:0000255|HAMAP-Rule:MF_01633}; EC=6.3.4.20 {ECO:0000255|HAMAP-Rule:MF_01633};; 7-cyano-7-carbaguanine synthase {ECO:0000255|HAMAP-Rule:MF_01633}; PreQ(0) synthase {ECO:0000255|HAMAP-Rule:MF_01633}; Queuosine biosynthesis protein QueC {ECO:0000255|HAMAP-Rule:MF_01633}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
ExsB ATPase; K06920 queuosine biosynthesis protein QueC id=12494369 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
ExsB ATPase; K06920 queuosine biosynthesis protein QueC rbh
scnpilot_solids1_trim150_scaffold_3006_11
Thiobacillus denitrificans, Thiobacillus, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7097..8275
DNA (1179bp) protein (393aa)
transmembrane protein; K07112 id=12494370 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria rbh
transmembrane protein; K07112
Probable transmembrane protein {ECO:0000313|EMBL:AAZ98154.1}; TaxID=292415 species="Bacteria; Proteobacteria; Betaproteobacteria; Hydrogenophilales; Hydrogenophilaceae; Thiobacillus.;" source="Thiobacillus denitrificans (strain ATCC 25259).;"
Displaying 11 items

View Taxonomy