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scnpilot_solids1_trim150_scaffold_2523

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_2523_1
Pseudomonas brassicacearum, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..919
DNA (918bp) protein (306aa)
hypothetical protein n=1 Tax=Pseudomonas veronii RepID=UPI000381714B rbh
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AHL34983.1}; TaxID=930166 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas brassicacearum.;"
solute-binding component of ABC transporter
scnpilot_solids1_trim150_scaffold_2523_2
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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942..1709
DNA (768bp) protein (256aa)
arginine ABC transporter ATP-binding protein n=1 Tax=Pseudomonas veronii RepID=UPI00034B5AE0 rbh
Glutamine abc transporter, ATP-binding protein {ECO:0000313|EMBL:EGH53234.1}; TaxID=629264 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" source="Pseudomonas syringae Cit 7.;"
polar amino acid transport system ATP-binding protein
scnpilot_solids1_trim150_scaffold_2523_3
Pseudomonas brassicacearum, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1719..2399
DNA (681bp) protein (227aa)
hypothetical protein n=1 Tax=Pseudomonas veronii RepID=UPI00034B6B3D
Amino acid ABC transporter permease {ECO:0000313|EMBL:AHL34981.1}; TaxID=930166 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas brassicacearum.;"
polar amino acid ABC transporter inner membrane subunit; K02029 polar amino acid transport system permease protein
scnpilot_solids1_trim150_scaffold_2523_4
Pseudomonas cichorii, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2540..2980
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Pseudomonas veronii RepID=UPI000381D61B
Uncharacterized protein {ECO:0000313|EMBL:AHF66529.1}; TaxID=1441629 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas cichorii JBC1.;"
amino acid ABC transporter permease
scnpilot_solids1_trim150_scaffold_2523_5
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3054..3428
DNA (375bp) protein (125aa)
Translation initiation inhibitor n=1 Tax=Serratia fonticola AU-P3(3) RepID=U2N9N1_SERFO
Uncharacterized protein {ECO:0000313|EMBL:KKB63763.1}; TaxID=28092 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia andropogonis.;"
endoribonuclease L-PSP
scnpilot_solids1_trim150_scaffold_2523_6
bacterium YEK0313, Bacteria

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3434..4690
DNA (1257bp) protein (419aa)
D-amino acid dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01202}; EC=1.4.99.1 {ECO:0000256|HAMAP-Rule:MF_01202};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
D-amino-acid dehydrogenase; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
D-amino acid dehydrogenase small subunit n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=DADA_METNO
scnpilot_solids1_trim150_scaffold_2523_7
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4726..5973
DNA (1248bp) protein (416aa)
FAD dependent oxidoreductase (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
FAD dependent oxidoreductase n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SQX2_RHOPH
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
scnpilot_solids1_trim150_scaffold_2523_8
Osedax symbiont Rs2, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5991..6821)
DNA (831bp) protein (277aa)
Polyamine ABC transporter permease PotC n=1 Tax=Osedax symbiont Rs2 RepID=S6GNM0_9GAMM
Polyamine ABC transporter permease PotC {ECO:0000313|EMBL:EPJ54021.1}; TaxID=1330035 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillaceae.;" source="Osedax symbiont Rs2.;"
spermidine/putrescine ABC transporter permease protein
scnpilot_solids1_trim150_scaffold_2523_9
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6823..7671)
DNA (849bp) protein (283aa)
UPI0003CFC47F related cluster n=1 Tax=unknown RepID=UPI0003CFC47F
ABC transporter permease {ECO:0000313|EMBL:ESZ26179.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
ABC-type spermidine/putrescine transport system, permease component I
scnpilot_solids1_trim150_scaffold_2523_10
Rubellimicrobium mesophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7765..8883)
DNA (1119bp) protein (373aa)
Polyamine ABC transporter, periplasmic polyamine-binding protein PotD-3 n=4 Tax=Rhodobacter capsulatus RepID=D5AL08_RHOCB
ABC transporter, periplasmic spermidine putrescine-binding protein PotD {ECO:0000313|EMBL:EYD75573.1}; TaxID=442562 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium mesophilum DSM 19309.;"
potD3; polyamine ABC transporter periplasmic polyamine-binding protein PotD
scnpilot_solids1_trim150_scaffold_2523_11
Rhodobacter capsulatus, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8910..10010)
DNA (1101bp) protein (367aa)
potA3; polyamine ABC transporter ATP-binding protein PotA (EC:3.6.3.31); K11072 spermidine/putrescine transport system ATP-binding protein [EC:3.6.3.31] rbh
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=272942 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003).;"
Spermidine/putrescine ABC transporter ATP-binding protein n=1 Tax=Rhodobacter capsulatus YW2 RepID=V8HKD1_RHOCA rbh
scnpilot_solids1_trim150_scaffold_2523_12
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10007..10561)
DNA (555bp) protein (185aa)
UPI0003D04355 related cluster n=1 Tax=unknown RepID=UPI0003D04355
Oxidoreductase {ECO:0000313|EMBL:EXL10592.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
short-chain dehydrogenase/reductase SDR
Displaying 12 items

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