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scnpilot_solids1_trim150_scaffold_6421

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_6421_1
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..526
DNA (525bp) protein (175aa)
30S ribosomal protein S4 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URX8_PSEUP
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
rpsD; 30S ribosomal protein S4; K02986 small subunit ribosomal protein S4
scnpilot_solids1_trim150_scaffold_6421_2
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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580..1578
DNA (999bp) protein (333aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059, ECO:0000313|EMBL:KIJ72376.1}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059, ECO:0000313|EMBL:KIJ72376.1};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
rpoA; DNA-directed RNA polymerase subunit alpha; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
DNA-directed RNA polymerase subunit alpha n=1 Tax=Xanthomonas RepID=UPI000262A558
scnpilot_solids1_trim150_scaffold_6421_3
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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1867..2238
DNA (372bp) protein (124aa)
50S ribosomal protein L17 n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7URX6_PSEUP
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
rplQ; 50S ribosomal protein L17; K02879 large subunit ribosomal protein L17
scnpilot_solids1_trim150_scaffold_6421_4
Xanthomonas vasicola, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2346..2864
DNA (519bp) protein (173aa)
dihydrolipoamide acetyltransferase n=1 Tax=Xanthomonas RepID=UPI0001CBFEF8
Disulfide bond formation protein B {ECO:0000256|HAMAP-Rule:MF_00286}; Disulfide oxidoreductase {ECO:0000256|HAMAP-Rule:MF_00286}; TaxID=1094180 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas vasicola pv. vasculorum NCPPB 1381.;"
disulfide bond formation protein B; K03611 disulfide bond formation protein DsbB
scnpilot_solids1_trim150_scaffold_6421_5
Xanthomonas translucens, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2926..4254
DNA (1329bp) protein (443aa)
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:EKU24044.1}; EC=2.5.1.54 {ECO:0000313|EMBL:EKU24044.1};; TaxID=1195885 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas translucens pv. graminis ART-Xtg29.;"
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
3-deoxy-7-phosphoheptulonate synthase n=1 Tax=Xanthomonas translucens pv. graminis ART-Xtg29 RepID=K8YZC8_XANCT
scnpilot_solids1_trim150_scaffold_6421_6
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4312..5688)
DNA (1377bp) protein (459aa)
amidase n=1 Tax=Arenimonas oryziterrae RepID=UPI0003B7BAD5 rbh
Amidase {ECO:0000313|EMBL:KGQ19474.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
glu-trnAgln amidotransferase a subunit
Displaying 6 items

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