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scnpilot_solids1_trim150_scaffold_1311

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_1311_1
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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155..424
DNA (270bp) protein (90aa)
glutathione S-transferase (EC:2.5.1.18); K00799 glutathione S-transferase [EC:2.5.1.18]
Putative glutathione S-transferase {ECO:0000313|EMBL:CAX25552.1}; EC=2.5.1.18 {ECO:0000313|EMBL:CAX25552.1};; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
glutathione S-transferase n=1 Tax=Xanthomonas axonopodis RepID=UPI0002D9FA4C
scnpilot_solids1_trim150_scaffold_1311_2
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(354..1847)
DNA (1494bp) protein (498aa)
L-fucose permease n=2 Tax=Stenotrophomonas maltophilia RepID=M3G6C5_STEMA rbh
putative transmembrane transporter rbh
Putative transmembrane transporter {ECO:0000313|EMBL:CAQ46043.1}; TaxID=522373 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia (strain K279a).;"
scnpilot_solids1_trim150_scaffold_1311_3
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2002..2613
DNA (612bp) protein (204aa)
UPF0114 protein BN115_2844 n=3 Tax=Bordetella bronchiseptica RepID=K0MUU2_BORBM
UPF0114 protein WQ53_09250 {ECO:0000256|HAMAP-Rule:MF_00143}; TaxID=314722 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1311_4
Lysobacter arseniciresistens, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2650..4851
DNA (2202bp) protein (734aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=913325 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter arseniciresistens ZS79.;"
uvrD; ATP-dependent DNA helicase UvrD/PcrA; K03657 DNA helicase II / ATP-dependent DNA helicase PcrA [EC:3.6.4.12]
DNA helicase II n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0003793B34
scnpilot_solids1_trim150_scaffold_1311_5
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4864..5145)
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Stenotrophomonas maltophilia RepID=UPI0002DAE56C
hypothetical protein
Putative secreted protein {ECO:0000313|EMBL:ADV28632.1}; Flags: Precursor;; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_1311_6
Lysobacter defluvii, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5200..7044)
DNA (1845bp) protein (615aa)
ABC transporter related protein n=1 Tax=Pseudoxanthomonas suwonensis (strain 11-1) RepID=E6WWT6_PSEUU rbh
Multidrug ABC transporter ATP-binding protein {ECO:0000313|EMBL:KGO99599.1}; TaxID=1385515 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter defluvii IMMIB APB-9 = DSM 18482.;"
ABC transporter; K06147 ATP-binding cassette, subfamily B, bacterial rbh
scnpilot_solids1_trim150_scaffold_1311_7
Pseudoxanthomonas suwonensis, Pseudoxanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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7128..9923
DNA (2796bp) protein (932aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] rbh
DNA polymerase I n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0002DB74C0 rbh
DNA polymerase I {ECO:0000313|EMBL:ADV28631.1}; TaxID=743721 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Pseudoxanthomonas.;" source="Pseudoxanthomonas suwonensis (strain 11-1).;"
scnpilot_solids1_trim150_scaffold_1311_8
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10363..10842
DNA (480bp) protein (160aa)
Uncharacterized protein n=2 Tax=Xanthomonas campestris pv. translucens RepID=K8Z6X2_XANCT
Membrane protein {ECO:0000313|EMBL:KGM51290.1}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1311_9
Lysobacter sp. A03, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10953..11105
DNA (153bp) protein (51aa)
entericidin n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003157DB2
NODE_46, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ96418.1}; TaxID=1199154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter sp. A03.;"
entericidin EcnAB
scnpilot_solids1_trim150_scaffold_1311_10
unknown

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11221..11349
DNA (129bp) protein (43aa)

This feature has no annotations

scnpilot_solids1_trim150_scaffold_1311_11
Lysobacter daejeonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11389..12165)
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Xanthomonas translucens DAR61454 RepID=L7GRT4_XANCT
Uncharacterized protein {ECO:0000313|EMBL:KGM55064.1}; TaxID=1385517 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter daejeonensis GH1-9.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_1311_12
Lysobacter concretionis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12292..13611
DNA (1320bp) protein (440aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1122185 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter concretionis Ko07 = DSM 16239.;"
tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2]
Tryptophan--tRNA ligase n=1 Tax=Pseudoxanthomonas spadix (strain BD-a59) RepID=G7UWU3_PSEUP
scnpilot_solids1_trim150_scaffold_1311_13
Lysobacter capsici, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13608..13919
DNA (312bp) protein (104aa)
Putative uncharacterized protein n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L9Z5_9GAMM
Membrane protein {ECO:0000313|EMBL:EYR68444.1}; TaxID=1444315 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter capsici AZ78.;"
putative transmembrane protein
scnpilot_solids1_trim150_scaffold_1311_14
Lysobacter dokdonensis, Lysobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(13920..14120)
DNA (201bp) protein (67aa)
glyoxalase n=1 Tax=Pseudoxanthomonas sp. GW2 RepID=UPI0003180B59
Glyoxalase {ECO:0000313|EMBL:KGQ17851.1}; TaxID=1300345 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Lysobacter.;" source="Lysobacter dokdonensis DS-58.;"
hypothetical protein
Displaying 14 items

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