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scnpilot_solids1_trim150_scaffold_803

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_803_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..972)
DNA (972bp) protein (324aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5F0_9GAMM
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
scnpilot_solids1_trim150_scaffold_803_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1042..2262)
DNA (1221bp) protein (407aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
RNA-splicing ligase RtcB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5E9_9GAMM rbh
Hypothetical Protein
scnpilot_solids1_trim150_scaffold_803_3
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2404..3528)
DNA (1125bp) protein (375aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5E8_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL94689.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_803_trna_3
unknown

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comp(3941..4014)
DNA (74bp)
transferRNA Met
scnpilot_solids1_trim150_scaffold_803_trna_2
unknown

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comp(4015..4083)
DNA (69bp)
transferRNA Undet
scnpilot_solids1_trim150_scaffold_803_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4714..5316)
DNA (603bp) protein (201aa)
Two component LuxR family transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5E7_9GAMM rbh
Two component LuxR family transcriptional regulator {ECO:0000313|EMBL:EIL94688.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
scnpilot_solids1_trim150_scaffold_803_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5362..6579)
DNA (1218bp) protein (406aa)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5E6_9GAMM rbh
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:EIL94687.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
signal transduction histidine kinase
scnpilot_solids1_trim150_scaffold_803_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6624..7415)
DNA (792bp) protein (264aa)
ABC transporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5E5_9GAMM rbh
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ABC-type multidrug transport system, permease component
scnpilot_solids1_trim150_scaffold_803_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7417..8346)
DNA (930bp) protein (310aa)
Putative ATP binding component of ABC transporter n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5E4_9GAMM rbh
Putative ATP binding component of ABC transporter {ECO:0000313|EMBL:EIL94685.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ABC-type multidrug transport system, ATPase component
scnpilot_solids1_trim150_scaffold_803_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8630..10126
DNA (1497bp) protein (499aa)
ornithine/acetylornithine aminotransferase (EC:2.6.1.36)
Ornithine/acetylornithine aminotransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5E3_9GAMM rbh
Ornithine/acetylornithine aminotransferase {ECO:0000313|EMBL:EIL94684.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_803_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10350..10709
DNA (360bp) protein (120aa)
PsiF repeat-containing protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5E2_9GAMM
PsiF repeat-containing protein {ECO:0000313|EMBL:EIL94683.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
psiF repeat protein
scnpilot_solids1_trim150_scaffold_803_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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10813..11457
DNA (645bp) protein (215aa)
Uracil phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084530}; EC=2.4.2.9 {ECO:0000256|HAMAP-Rule:MF_01218, ECO:0000256|SAAS:SAAS00084480};; UMP pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_01218}; UPRTase {ECO:0000256|HAMAP-Rule:MF_01218}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
uracil phosphoribosyltransferase (EC:2.4.2.9)
Uracil phosphoribosyltransferase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5E1_9GAMM rbh
scnpilot_solids1_trim150_scaffold_803_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11597..12556)
DNA (960bp) protein (320aa)
Proline iminopeptidase {ECO:0000256|RuleBase:RU003421}; EC=3.4.11.5 {ECO:0000256|RuleBase:RU003421};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
prolyl aminopeptidase (EC:3.4.11.5)
Proline iminopeptidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5E0_9GAMM rbh
scnpilot_solids1_trim150_scaffold_803_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12645..14039)
DNA (1395bp) protein (465aa)
FAD linked oxidase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5D9_9GAMM rbh
FAD linked oxidase {ECO:0000313|EMBL:EIL94680.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
FAD/FMN-dependent dehydrogenase
scnpilot_solids1_trim150_scaffold_803_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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14159..15391
DNA (1233bp) protein (411aa)
phosphoglycerate dehydrogenase-like oxidoreductase (EC:1.1.1.95)
D-3-phosphoglycerate dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5D8_9GAMM rbh
D-3-phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EIL94679.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_803_trna_1
unknown

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comp(15518..15591)
DNA (74bp)
transferRNA Pro
scnpilot_solids1_trim150_scaffold_803_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15645..16001)
DNA (357bp) protein (119aa)
Putative transcriptional regulator n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5D7_9GAMM
Putative transcriptional regulator {ECO:0000313|EMBL:EIL94678.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
putative transcriptional regulator
scnpilot_solids1_trim150_scaffold_803_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(15982..16281)
DNA (300bp) protein (100aa)
Integration host factor subunit alpha n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5D6_9GAMM
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
integration host factor, alpha subunit
scnpilot_solids1_trim150_scaffold_803_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16283..18661)
DNA (2379bp) protein (793aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phenylalanyl-tRNA synthetase, beta subunit (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5D5_9GAMM rbh
scnpilot_solids1_trim150_scaffold_803_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18758..19753)
DNA (996bp) protein (332aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
phenylalanyl-tRNA synthetase, alpha subunit (EC:6.1.1.20) rbh
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5D4_9GAMM rbh
scnpilot_solids1_trim150_scaffold_803_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(20012..20371)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5D3_9GAMM
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
LSU ribosomal protein L20P
scnpilot_solids1_trim150_scaffold_803_19
Rhodanobacter denitrificans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20383..20580)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=2 Tax=Rhodanobacter RepID=I4WNQ6_9GAMM
LSU ribosomal protein L35P
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=666685 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter denitrificans.;"
scnpilot_solids1_trim150_scaffold_803_20
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20930..21169)
DNA (240bp) protein (80aa)
Translation initiation factor IF-3 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W5D1_9GAMM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
bacterial translation initiation factor 3 (bIF-3)
Displaying 23 items

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