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scnpilot_solids1_trim150_scaffold_840

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids1_trim150_scaffold_840_1
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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2..1726
DNA (1725bp) protein (575aa)
TonB-dependent receptor n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S2_9GAMM rbh
TonB-dependent receptor {ECO:0000313|EMBL:EIL93763.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
TonB-dependent receptor
scnpilot_solids1_trim150_scaffold_840_2
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1784..2872)
DNA (1089bp) protein (363aa)
Ribosome-binding ATPase YchF n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S3_9GAMM rbh
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
GTP-binding protein YchF
scnpilot_solids1_trim150_scaffold_840_3
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2959..3564)
DNA (606bp) protein (202aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S4_9GAMM rbh
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
scnpilot_solids1_trim150_scaffold_840_4
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3616..4311)
DNA (696bp) protein (232aa)
50S ribosomal protein L25 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S5_9GAMM rbh
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00147491}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023359}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
ribosomal protein L25, Ctc-form
scnpilot_solids1_trim150_scaffold_840_5
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4455..5414)
DNA (960bp) protein (320aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583};; 5-phospho-D-ribosyl alpha-1-diphosphate {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; Phosphoribosyl pyrophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00583}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source=
Ribose-phosphate pyrophosphokinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S6_9GAMM rbh
ribose-phosphate pyrophosphokinase
scnpilot_solids1_trim150_scaffold_840_trna_1
unknown

Not on your lists

comp(5451..5524)
DNA (74bp)
transferRNA Gln
scnpilot_solids1_trim150_scaffold_840_6
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5568..6959)
DNA (1392bp) protein (464aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S7_9GAMM rbh
scnpilot_solids1_trim150_scaffold_840_7
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7032..7640)
DNA (609bp) protein (203aa)
Outer membrane lipoprotein LolB n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S8_9GAMM rbh
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
outer membrane lipoprotein LolB
scnpilot_solids1_trim150_scaffold_840_8
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7637..9394)
DNA (1758bp) protein (586aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2S9_9GAMM rbh
Uncharacterized protein {ECO:0000313|EMBL:EIL93770.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
Flp pilus assembly protein TadD
scnpilot_solids1_trim150_scaffold_840_9
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9488..10771
DNA (1284bp) protein (428aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
glutamyl-tRNA reductase (EC:1.2.1.70) rbh
Glutamyl-tRNA reductase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T0_9GAMM rbh
scnpilot_solids1_trim150_scaffold_840_10
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10857..11936
DNA (1080bp) protein (360aa)
Peptide chain release factor 1 n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T1_9GAMM rbh
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
bacterial peptide chain release factor 1 (bRF-1)
scnpilot_solids1_trim150_scaffold_840_11
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12532..13311
DNA (780bp) protein (260aa)
Polyphosphate kinase 2, PA0141 family protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T2_9GAMM rbh
Polyphosphate kinase 2, PA0141 family protein {ECO:0000313|EMBL:EIL93773.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
polyphosphate kinase 2, PA0141 family
scnpilot_solids1_trim150_scaffold_840_12
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13399..13668)
DNA (270bp) protein (90aa)
Acylphosphatase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T3_9GAMM
Acylphosphatase {ECO:0000256|SAAS:SAAS00255930}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acylphosphatase
scnpilot_solids1_trim150_scaffold_840_13
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13682..14167)
DNA (486bp) protein (162aa)
Thiol-disulfide isomerase-like thioredoxin n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T4_9GAMM rbh
Thiol-disulfide isomerase-like thioredoxin {ECO:0000313|EMBL:EIL93775.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
thiol-disulfide isomerase-like thioredoxin
scnpilot_solids1_trim150_scaffold_840_14
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14164..15441)
DNA (1278bp) protein (426aa)
hypothetical protein (EC:3.1.-.-)
UPF0761 membrane protein rbn n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T5_9GAMM rbh
UPF0761 membrane protein rbn {ECO:0000256|HAMAP-Rule:MF_00672}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_840_15
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15561..16163
DNA (603bp) protein (201aa)
NAD(P)H dehydrogenase (quinone) {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138}; EC=1.6.5.2 {ECO:0000256|HAMAP-Rule:MF_01017, ECO:0000256|SAAS:SAAS00064138};; NAD(P)H:quinone oxidoreductase {ECO:0000256|HAMAP-Rule:MF_01017}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
NAD(P)H dehydrogenase (quinone) n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T6_9GAMM rbh
NAD(P)H:quinone oxidoreductase, type IV
scnpilot_solids1_trim150_scaffold_840_16
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16160..16534
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIL93778.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
hypothetical protein
scnpilot_solids1_trim150_scaffold_840_17
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16653..16973)
DNA (321bp) protein (107aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T8_9GAMM
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EIL93779.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
glyoxalase/bleomycin resistance protein/dioxygenase
scnpilot_solids1_trim150_scaffold_840_18
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17233..18873
DNA (1641bp) protein (547aa)
Acyl-CoA dehydrogenase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2T9_9GAMM rbh
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EIL93780.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
acyl-CoA dehydrogenase
scnpilot_solids1_trim150_scaffold_840_19
Rhodanobacter spathiphylli, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18978..19466
DNA (489bp) protein (163aa)
L-asparaginase/GlutRNAGln amidotransferase subunit D (EC:3.5.1.1) rbh
Asparaginase n=1 Tax=Rhodanobacter spathiphylli B39 RepID=I4W2U0_9GAMM rbh
Asparaginase {ECO:0000313|EMBL:EIL93781.1}; TaxID=1163407 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter spathiphylli B39.;"
scnpilot_solids1_trim150_scaffold_840_20
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19578..20384)
DNA (807bp) protein (269aa)
Peptidase M4 thermolysin n=1 Tax=Rhodanobacter sp. 115 RepID=I4WT98_9GAMM
Peptidase M4 thermolysin {ECO:0000313|EMBL:EIM02690.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter sp. 115.;"
Zinc metalloprotease (elastase)
Displaying 21 items

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